miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6469 3' -58.9 NC_001847.1 + 68 0.79 0.147527
Target:  5'- cGGGCGggGGCGGGGUGggggaUGGGCGCGg- -3'
miRNA:   3'- -CCCGCuaCCGUCUCAC-----GCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 488 0.66 0.764162
Target:  5'- cGGCGgcGGCGGGGcgGCc-GCGCGcCa -3'
miRNA:   3'- cCCGCuaCCGUCUCa-CGcuCGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 3285 0.67 0.725814
Target:  5'- cGGCGAgcacGGCGcGcAGcucgGCGAGCGCGg- -3'
miRNA:   3'- cCCGCUa---CCGU-C-UCa---CGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 3526 0.68 0.655997
Target:  5'- cGGGCcGUGGCcGAcuacGgccGCGAGCGCGg- -3'
miRNA:   3'- -CCCGcUACCGuCU----Ca--CGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 3933 0.71 0.487374
Target:  5'- -aGCGcUGGCAGcGGgcgGCGAGCGCGa- -3'
miRNA:   3'- ccCGCuACCGUC-UCa--CGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 4812 0.73 0.373211
Target:  5'- uGGGgGAgacggGGUAGGGggGCGGGUGgGUCg -3'
miRNA:   3'- -CCCgCUa----CCGUCUCa-CGCUCGCgCAG- -5'
6469 3' -58.9 NC_001847.1 + 5074 0.67 0.725814
Target:  5'- cGGGcCGGgagcgGGCGGcAGUGCG-GCGCc-- -3'
miRNA:   3'- -CCC-GCUa----CCGUC-UCACGCuCGCGcag -5'
6469 3' -58.9 NC_001847.1 + 7245 0.7 0.506405
Target:  5'- uGGUcgGGUGGCu--GUGCGGGCGCGg- -3'
miRNA:   3'- cCCG--CUACCGucuCACGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 7618 0.67 0.716007
Target:  5'- gGGGUGGggGGguGGGUGgGGGgGUGg- -3'
miRNA:   3'- -CCCGCUa-CCguCUCACgCUCgCGCag -5'
6469 3' -58.9 NC_001847.1 + 7719 0.69 0.58523
Target:  5'- uGGGCauucagGcGCAGGGcGCGGGCGCGg- -3'
miRNA:   3'- -CCCGcua---C-CGUCUCaCGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 10752 0.71 0.468688
Target:  5'- aGGCGcauuuucUGGCAGAGcUGCGcGCGCGg- -3'
miRNA:   3'- cCCGCu------ACCGUCUC-ACGCuCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 10851 0.74 0.319719
Target:  5'- cGGCGcGUGGCcGAGgcgcgGCGGGCGCGg- -3'
miRNA:   3'- cCCGC-UACCGuCUCa----CGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 11781 0.71 0.450375
Target:  5'- aGGGCGGgcgGGCAGuG-GCGcuuucgacccGGCGCGUg -3'
miRNA:   3'- -CCCGCUa--CCGUCuCaCGC----------UCGCGCAg -5'
6469 3' -58.9 NC_001847.1 + 12310 0.67 0.706129
Target:  5'- aGGGCGcgGGCccg--GUGGGCGCGcCc -3'
miRNA:   3'- -CCCGCuaCCGucucaCGCUCGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 14131 0.67 0.686199
Target:  5'- cGGGCGAUgGGCGGGGcccGCGccuGgGCGg- -3'
miRNA:   3'- -CCCGCUA-CCGUCUCa--CGCu--CgCGCag -5'
6469 3' -58.9 NC_001847.1 + 15044 0.67 0.706129
Target:  5'- cGGGCGA--GCu--GUGCGAGCGCc-- -3'
miRNA:   3'- -CCCGCUacCGucuCACGCUCGCGcag -5'
6469 3' -58.9 NC_001847.1 + 15326 0.68 0.635754
Target:  5'- cGGGCGua-GCGGGG-GCGGGCGgGg- -3'
miRNA:   3'- -CCCGCuacCGUCUCaCGCUCGCgCag -5'
6469 3' -58.9 NC_001847.1 + 15537 0.66 0.754725
Target:  5'- cGGGCuGcUGGCGccGGUGCGcGCGCGg- -3'
miRNA:   3'- -CCCG-CuACCGUc-UCACGCuCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 16653 0.78 0.175966
Target:  5'- uGGCGAacgUGGCGGc--GCGGGCGCGUCg -3'
miRNA:   3'- cCCGCU---ACCGUCucaCGCUCGCGCAG- -5'
6469 3' -58.9 NC_001847.1 + 16836 0.66 0.761342
Target:  5'- uGGCGcgGGCAucggggcggcgcucGAG-GCGAGCGgGcUCc -3'
miRNA:   3'- cCCGCuaCCGU--------------CUCaCGCUCGCgC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.