miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6469 3' -58.9 NC_001847.1 + 11781 0.71 0.450375
Target:  5'- aGGGCGGgcgGGCAGuG-GCGcuuucgacccGGCGCGUg -3'
miRNA:   3'- -CCCGCUa--CCGUCuCaCGC----------UCGCGCAg -5'
6469 3' -58.9 NC_001847.1 + 78690 0.73 0.364414
Target:  5'- cGGGCGcUGGUGccgggcagcacgcGAGUGCGGGCG-GUCu -3'
miRNA:   3'- -CCCGCuACCGU-------------CUCACGCUCGCgCAG- -5'
6469 3' -58.9 NC_001847.1 + 59566 0.73 0.365208
Target:  5'- gGGGCGGUgccGGCGGAagcucuGgcugGCGuGCGCGUCc -3'
miRNA:   3'- -CCCGCUA---CCGUCU------Ca---CGCuCGCGCAG- -5'
6469 3' -58.9 NC_001847.1 + 107625 0.73 0.373211
Target:  5'- uGGGgGAgacggGGUAGGGggGCGGGUGgGUCg -3'
miRNA:   3'- -CCCgCUa----CCGUCUCa-CGCUCGCgCAG- -5'
6469 3' -58.9 NC_001847.1 + 128789 0.73 0.373211
Target:  5'- cGGGCGGUcagaccagGGCGGGcggGCGGGCGCG-Ca -3'
miRNA:   3'- -CCCGCUA--------CCGUCUca-CGCUCGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 73537 0.73 0.389571
Target:  5'- cGGCuGAUuGCGGAGgugggcGCGGGCGUGUCg -3'
miRNA:   3'- cCCG-CUAcCGUCUCa-----CGCUCGCGCAG- -5'
6469 3' -58.9 NC_001847.1 + 84476 0.72 0.397925
Target:  5'- gGGGgGggGGCgGGGGUGUGAaGCGCGg- -3'
miRNA:   3'- -CCCgCuaCCG-UCUCACGCU-CGCGCag -5'
6469 3' -58.9 NC_001847.1 + 18070 0.72 0.397925
Target:  5'- gGGGaCGGggagGGCGGAG-GCGAGgGCGa- -3'
miRNA:   3'- -CCC-GCUa---CCGUCUCaCGCUCgCGCag -5'
6469 3' -58.9 NC_001847.1 + 19748 0.72 0.406393
Target:  5'- cGGGCcgcuuagcggGAaGGCGGGGUGCGggcucGGCGCaGUCa -3'
miRNA:   3'- -CCCG----------CUaCCGUCUCACGC-----UCGCG-CAG- -5'
6469 3' -58.9 NC_001847.1 + 126211 0.73 0.357324
Target:  5'- uGGGCGGagcucacuUGGCGGGGUcgucgGCGGG-GCGUCc -3'
miRNA:   3'- -CCCGCU--------ACCGUCUCA-----CGCUCgCGCAG- -5'
6469 3' -58.9 NC_001847.1 + 134952 0.74 0.341918
Target:  5'- gGGGCGggGGCGGGG-GCGGGgGCc-- -3'
miRNA:   3'- -CCCGCuaCCGUCUCaCGCUCgCGcag -5'
6469 3' -58.9 NC_001847.1 + 10851 0.74 0.319719
Target:  5'- cGGCGcGUGGCcGAGgcgcgGCGGGCGCGg- -3'
miRNA:   3'- cCCGC-UACCGuCUCa----CGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 31821 0.78 0.179959
Target:  5'- cGGcGCGggGGCAGAGUGCGAggacccuacguucGCGCGcCc -3'
miRNA:   3'- -CC-CGCuaCCGUCUCACGCU-------------CGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 27295 0.78 0.194329
Target:  5'- cGGGCGAgaggacGGCGGuGccgGCGGGCGUGUCc -3'
miRNA:   3'- -CCCGCUa-----CCGUCuCa--CGCUCGCGCAG- -5'
6469 3' -58.9 NC_001847.1 + 101086 0.77 0.214346
Target:  5'- gGGGCcgGGUcGGCGGGGcggGCGGGCGCGUUc -3'
miRNA:   3'- -CCCG--CUA-CCGUCUCa--CGCUCGCGCAG- -5'
6469 3' -58.9 NC_001847.1 + 85789 0.76 0.236107
Target:  5'- -uGCGGUGcGCgucgAGGGUGCGGGCGCGUg -3'
miRNA:   3'- ccCGCUAC-CG----UCUCACGCUCGCGCAg -5'
6469 3' -58.9 NC_001847.1 + 102690 0.76 0.247667
Target:  5'- gGGGCGggGGCAGGGcgccggGCGGGCgGCGa- -3'
miRNA:   3'- -CCCGCuaCCGUCUCa-----CGCUCG-CGCag -5'
6469 3' -58.9 NC_001847.1 + 125265 0.75 0.26588
Target:  5'- cGGGCGAgcGGCAGAGgcgGCagGAGC-CGUCg -3'
miRNA:   3'- -CCCGCUa-CCGUCUCa--CG--CUCGcGCAG- -5'
6469 3' -58.9 NC_001847.1 + 134134 0.75 0.285162
Target:  5'- cGGGCGgcGGCcuGGUG-GAGCGCGUg -3'
miRNA:   3'- -CCCGCuaCCGucUCACgCUCGCGCAg -5'
6469 3' -58.9 NC_001847.1 + 69441 0.75 0.29183
Target:  5'- cGGCGGUGGCGGAcgGCGGcGCGCG-Cg -3'
miRNA:   3'- cCCGCUACCGUCUcaCGCU-CGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.