miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6469 5' -53.3 NC_001847.1 + 96255 0.66 0.955209
Target:  5'- ------gGGCCGGCggCGGCAa-UGGCg -3'
miRNA:   3'- auuugaaCCGGCCGa-GCCGUgcAUUG- -5'
6469 5' -53.3 NC_001847.1 + 21730 0.66 0.955209
Target:  5'- aGGGCgcgGGCCGGCgccggcccgCGcGCGCGggggGGCc -3'
miRNA:   3'- aUUUGaa-CCGGCCGa--------GC-CGUGCa---UUG- -5'
6469 5' -53.3 NC_001847.1 + 53592 0.66 0.955209
Target:  5'- -cAGCUgcgcggGGCCGGCgagcUCGGC-CGccgAACg -3'
miRNA:   3'- auUUGAa-----CCGGCCG----AGCCGuGCa--UUG- -5'
6469 5' -53.3 NC_001847.1 + 5345 0.66 0.955209
Target:  5'- gGAGCUggcuaGCCGGCcgCGGCugGa--- -3'
miRNA:   3'- aUUUGAac---CGGCCGa-GCCGugCauug -5'
6469 5' -53.3 NC_001847.1 + 92921 0.66 0.955209
Target:  5'- gUGAACUauuUGGCCuuUUCGGCGCGccUGGCc -3'
miRNA:   3'- -AUUUGA---ACCGGccGAGCCGUGC--AUUG- -5'
6469 5' -53.3 NC_001847.1 + 124543 0.66 0.955209
Target:  5'- aGGGCgcgGGCCGGCgccggcccgCGcGCGCGggggGGCc -3'
miRNA:   3'- aUUUGaa-CCGGCCGa--------GC-CGUGCa---UUG- -5'
6469 5' -53.3 NC_001847.1 + 108158 0.66 0.955209
Target:  5'- gGAGCUggcuaGCCGGCcgCGGCugGa--- -3'
miRNA:   3'- aUUUGAac---CGGCCGa-GCCGugCauug -5'
6469 5' -53.3 NC_001847.1 + 96342 0.66 0.955209
Target:  5'- ------gGGCCGGCggCGGCAa-UGGCg -3'
miRNA:   3'- auuugaaCCGGCCGa-GCCGUgcAUUG- -5'
6469 5' -53.3 NC_001847.1 + 59875 0.66 0.955209
Target:  5'- ------gGGCCGGCgcgCGGCcuccGCGuUGGCg -3'
miRNA:   3'- auuugaaCCGGCCGa--GCCG----UGC-AUUG- -5'
6469 5' -53.3 NC_001847.1 + 53827 0.66 0.955209
Target:  5'- cGGGCgcGGCUGGCggCGGCagcgGCGgcGCu -3'
miRNA:   3'- aUUUGaaCCGGCCGa-GCCG----UGCauUG- -5'
6469 5' -53.3 NC_001847.1 + 58247 0.66 0.954805
Target:  5'- cGAGCUcGGCCggauuagGGUUCGGCGCcacccgGGCa -3'
miRNA:   3'- aUUUGAaCCGG-------CCGAGCCGUGca----UUG- -5'
6469 5' -53.3 NC_001847.1 + 106814 0.66 0.954805
Target:  5'- --cGCUgcccGCCGGCgagCGGCACGcagggucggggccUAACa -3'
miRNA:   3'- auuUGAac--CGGCCGa--GCCGUGC-------------AUUG- -5'
6469 5' -53.3 NC_001847.1 + 85982 0.66 0.951056
Target:  5'- -----aUGGUCGGCagacgCGGCGCGgcAACa -3'
miRNA:   3'- auuugaACCGGCCGa----GCCGUGCa-UUG- -5'
6469 5' -53.3 NC_001847.1 + 44294 0.66 0.951056
Target:  5'- ------cGGCgCGGCgCGGCGCGgcgGGCc -3'
miRNA:   3'- auuugaaCCG-GCCGaGCCGUGCa--UUG- -5'
6469 5' -53.3 NC_001847.1 + 2389 0.66 0.951056
Target:  5'- aAGACggcGGUgaCGcGCUCGGC-CGUGGCu -3'
miRNA:   3'- aUUUGaa-CCG--GC-CGAGCCGuGCAUUG- -5'
6469 5' -53.3 NC_001847.1 + 14677 0.66 0.951056
Target:  5'- -cGGCgcGGCCGGCggcgCGGCgAUGgaGCa -3'
miRNA:   3'- auUUGaaCCGGCCGa---GCCG-UGCauUG- -5'
6469 5' -53.3 NC_001847.1 + 9512 0.66 0.951056
Target:  5'- cGGACccGaGCCGaGCgggCGGCGCGcUAGCg -3'
miRNA:   3'- aUUUGaaC-CGGC-CGa--GCCGUGC-AUUG- -5'
6469 5' -53.3 NC_001847.1 + 77238 0.66 0.946652
Target:  5'- cGGACUUGGCgCGGUcgcgCGgGCGC-UGGCg -3'
miRNA:   3'- aUUUGAACCG-GCCGa---GC-CGUGcAUUG- -5'
6469 5' -53.3 NC_001847.1 + 53706 0.66 0.943889
Target:  5'- cGAGCgcgccGCCGGCggcucgcggggcggaUCGGCGCGcGGCg -3'
miRNA:   3'- aUUUGaac--CGGCCG---------------AGCCGUGCaUUG- -5'
6469 5' -53.3 NC_001847.1 + 23765 0.66 0.941996
Target:  5'- uUGAACUUGGCCaGCggaugcccgGGCGCGa--- -3'
miRNA:   3'- -AUUUGAACCGGcCGag-------CCGUGCauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.