miRNA display CGI


Results 21 - 40 of 811 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6470 3' -58.3 NC_001847.1 + 36078 0.66 0.836667
Target:  5'- -gCGCGCuGGACgCGCGGCuGGCGgagcgcGGCg -3'
miRNA:   3'- ggGUGCG-UCUG-GUGCUGcCCGUa-----CCG- -5'
6470 3' -58.3 NC_001847.1 + 3854 0.66 0.836667
Target:  5'- cCCCagACGUAGACgGCGcCGGGgcUGcGCa -3'
miRNA:   3'- -GGG--UGCGUCUGgUGCuGCCCguAC-CG- -5'
6470 3' -58.3 NC_001847.1 + 121165 0.66 0.836667
Target:  5'- aCCCGcCGCuugccGGCCAgGgGCGGGCucgccacgGGCc -3'
miRNA:   3'- -GGGU-GCGu----CUGGUgC-UGCCCGua------CCG- -5'
6470 3' -58.3 NC_001847.1 + 15071 0.66 0.836667
Target:  5'- cCCCGCGCGGcucggcaggaGCCGgGGCuaGGaGCAaagggGGCg -3'
miRNA:   3'- -GGGUGCGUC----------UGGUgCUG--CC-CGUa----CCG- -5'
6470 3' -58.3 NC_001847.1 + 75944 0.66 0.836667
Target:  5'- aCgGCGCGGACgGCu-CGGGCuacgacGGCc -3'
miRNA:   3'- gGgUGCGUCUGgUGcuGCCCGua----CCG- -5'
6470 3' -58.3 NC_001847.1 + 60117 0.66 0.836667
Target:  5'- gCUCGCGCGGcgugaGCGAgGgGGCGUcGGCg -3'
miRNA:   3'- -GGGUGCGUCugg--UGCUgC-CCGUA-CCG- -5'
6470 3' -58.3 NC_001847.1 + 63423 0.66 0.836667
Target:  5'- gCgCACGCGG-CgC-CGGCGGGCc-GGCg -3'
miRNA:   3'- -GgGUGCGUCuG-GuGCUGCCCGuaCCG- -5'
6470 3' -58.3 NC_001847.1 + 95061 0.66 0.835858
Target:  5'- aCCgGCGCggcaaggGGugCAauuagaGGCGcuGGCGUGGCg -3'
miRNA:   3'- -GGgUGCG-------UCugGUg-----CUGC--CCGUACCG- -5'
6470 3' -58.3 NC_001847.1 + 32326 0.66 0.834236
Target:  5'- aCCCGCuggaacacgcgaucGCGGGCCuguuUGAgCGGGUGcUGGCc -3'
miRNA:   3'- -GGGUG--------------CGUCUGGu---GCU-GCCCGU-ACCG- -5'
6470 3' -58.3 NC_001847.1 + 132797 0.66 0.834236
Target:  5'- cCUCAUGCGGcCCgugcaaaACGGCGGGUuccgcgcagcgGGCg -3'
miRNA:   3'- -GGGUGCGUCuGG-------UGCUGCCCGua---------CCG- -5'
6470 3' -58.3 NC_001847.1 + 93024 0.66 0.831789
Target:  5'- gCCaACGCGGgaagcggcccccggcGCCugGACGGuGCc-GGCa -3'
miRNA:   3'- gGG-UGCGUC---------------UGGugCUGCC-CGuaCCG- -5'
6470 3' -58.3 NC_001847.1 + 70755 0.66 0.831789
Target:  5'- gCCGCGCAGA-----GCGGGCGccgcauuuuuuugucUGGCg -3'
miRNA:   3'- gGGUGCGUCUggugcUGCCCGU---------------ACCG- -5'
6470 3' -58.3 NC_001847.1 + 85743 0.66 0.828502
Target:  5'- nCUGCGCGGagcccGCCAUGACGGcaacGCcgggGGCa -3'
miRNA:   3'- gGGUGCGUC-----UGGUGCUGCC----CGua--CCG- -5'
6470 3' -58.3 NC_001847.1 + 96365 0.66 0.828502
Target:  5'- gCCgGCGguGGCaAUGGCGGGgccGGCg -3'
miRNA:   3'- -GGgUGCguCUGgUGCUGCCCguaCCG- -5'
6470 3' -58.3 NC_001847.1 + 100212 0.66 0.828502
Target:  5'- gCCGCGCAGcugcgccaGCgGCGGCGGGaCAUc-- -3'
miRNA:   3'- gGGUGCGUC--------UGgUGCUGCCC-GUAccg -5'
6470 3' -58.3 NC_001847.1 + 28278 0.66 0.828502
Target:  5'- aUCUACGCAcGCgAgGACGcGGCGUGcGUg -3'
miRNA:   3'- -GGGUGCGUcUGgUgCUGC-CCGUAC-CG- -5'
6470 3' -58.3 NC_001847.1 + 80125 0.66 0.828502
Target:  5'- gCCCACGUuuuCCACGcuaaaguacagcGCGGuGUuUGGCg -3'
miRNA:   3'- -GGGUGCGucuGGUGC------------UGCC-CGuACCG- -5'
6470 3' -58.3 NC_001847.1 + 95139 0.66 0.828502
Target:  5'- gCCgGCGCuGcGCUugGGgGugccGGCAUGGCg -3'
miRNA:   3'- -GGgUGCGuC-UGGugCUgC----CCGUACCG- -5'
6470 3' -58.3 NC_001847.1 + 98006 0.66 0.828502
Target:  5'- cCCCAa--AGGCC-CGcUGGGCGUGcGCg -3'
miRNA:   3'- -GGGUgcgUCUGGuGCuGCCCGUAC-CG- -5'
6470 3' -58.3 NC_001847.1 + 30366 0.66 0.828502
Target:  5'- -gCugGCGGGCCACu-CGGcGC-UGGUg -3'
miRNA:   3'- ggGugCGUCUGGUGcuGCC-CGuACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.