miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6470 5' -57 NC_001847.1 + 70221 0.66 0.816721
Target:  5'- cGUGCUGCuggagaaggcgccGCCGAuGUCGcugcugGUGCCGCu- -3'
miRNA:   3'- -CAUGACG-------------CGGCU-UAGCa-----CGCGGCGua -5'
6470 5' -57 NC_001847.1 + 81827 0.66 0.808753
Target:  5'- -gGC-GCGCCGucuGUCGccCGCCGCAc -3'
miRNA:   3'- caUGaCGCGGCu--UAGCacGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 117821 0.66 0.808753
Target:  5'- ----gGCGCCGGcuacgcggcCGUGUGCCGCGc -3'
miRNA:   3'- caugaCGCGGCUua-------GCACGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 49902 0.66 0.808753
Target:  5'- cGUGCUGgGcCCGGccgCGgugGCGCUGCGc -3'
miRNA:   3'- -CAUGACgC-GGCUua-GCa--CGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 39811 0.66 0.806964
Target:  5'- -gGCUGCGCCcccugcgccuUCGgcccugccgGCGCCGCGc -3'
miRNA:   3'- caUGACGCGGcuu-------AGCa--------CGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 118481 0.66 0.799744
Target:  5'- -gGCUGCG-CGAcgCGcccGCGCCGCc- -3'
miRNA:   3'- caUGACGCgGCUuaGCa--CGCGGCGua -5'
6470 5' -57 NC_001847.1 + 9536 0.66 0.799744
Target:  5'- -cGCUaGCGuCCGug-CGUGCGCCaGCGc -3'
miRNA:   3'- caUGA-CGC-GGCuuaGCACGCGG-CGUa -5'
6470 5' -57 NC_001847.1 + 66898 0.66 0.799744
Target:  5'- aGUGCUucGCGCUGAugcaagCGUGCuugcggccccGCCGCGg -3'
miRNA:   3'- -CAUGA--CGCGGCUua----GCACG----------CGGCGUa -5'
6470 5' -57 NC_001847.1 + 5898 0.66 0.799744
Target:  5'- -gGCcGCGCCGucgcaGAUUGUGCGCC-CGg -3'
miRNA:   3'- caUGaCGCGGC-----UUAGCACGCGGcGUa -5'
6470 5' -57 NC_001847.1 + 86414 0.66 0.79701
Target:  5'- aUACUGCaccGCCGccUCGUccuuccgcuucaucGCGCCGCGc -3'
miRNA:   3'- cAUGACG---CGGCuuAGCA--------------CGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 84774 0.67 0.790578
Target:  5'- -gGCgGCGCCGuccuuagcGUCGgccGCGCCGCc- -3'
miRNA:   3'- caUGaCGCGGCu-------UAGCa--CGCGGCGua -5'
6470 5' -57 NC_001847.1 + 33583 0.67 0.790578
Target:  5'- cGUGCgcgGUGCCGAcgacGUCcUGCGCCaGCu- -3'
miRNA:   3'- -CAUGa--CGCGGCU----UAGcACGCGG-CGua -5'
6470 5' -57 NC_001847.1 + 33542 0.67 0.781265
Target:  5'- -gGCgcggGCGCCGAAgaggCGgcaGaCGCCGCGg -3'
miRNA:   3'- caUGa---CGCGGCUUa---GCa--C-GCGGCGUa -5'
6470 5' -57 NC_001847.1 + 52242 0.67 0.781265
Target:  5'- uGUGCUuugacaagacGCGCCGcuUCGUGC-UCGCGUg -3'
miRNA:   3'- -CAUGA----------CGCGGCuuAGCACGcGGCGUA- -5'
6470 5' -57 NC_001847.1 + 71950 0.67 0.781265
Target:  5'- -cGCcGCGCCGcacGUCGUgGCGCgGCGc -3'
miRNA:   3'- caUGaCGCGGCu--UAGCA-CGCGgCGUa -5'
6470 5' -57 NC_001847.1 + 22089 0.67 0.781265
Target:  5'- -gACgUGCGCCGAcgCGcUGCgGCUGCu- -3'
miRNA:   3'- caUG-ACGCGGCUuaGC-ACG-CGGCGua -5'
6470 5' -57 NC_001847.1 + 43552 0.67 0.781265
Target:  5'- ----aGCGCCGccgCGaGCGCCGCGa -3'
miRNA:   3'- caugaCGCGGCuuaGCaCGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 74475 0.67 0.771815
Target:  5'- cGUGCUGUGCCGcGAgggcgCGgacGCGgCCGCGc -3'
miRNA:   3'- -CAUGACGCGGC-UUa----GCa--CGC-GGCGUa -5'
6470 5' -57 NC_001847.1 + 80810 0.67 0.771815
Target:  5'- uUACgGCGgCGAAggcCGcGCGCCGCGa -3'
miRNA:   3'- cAUGaCGCgGCUUa--GCaCGCGGCGUa -5'
6470 5' -57 NC_001847.1 + 18528 0.67 0.771815
Target:  5'- cUGCgggcGCGCCGc--CGUccGCGCCGCAg -3'
miRNA:   3'- cAUGa---CGCGGCuuaGCA--CGCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.