miRNA display CGI


Results 1 - 20 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6471 3' -58.2 NC_001847.1 + 87408 0.65 0.829755
Target:  5'- cGCGCGGGCggggcCCCGcccgccgcgcucgaaGAGCugCUgCGCg -3'
miRNA:   3'- -CGCGUCCGa----GGGCca-------------CUUGugGA-GCG- -5'
6471 3' -58.2 NC_001847.1 + 48628 0.65 0.829755
Target:  5'- aCGCGGGCgCCCagccgccgcgcgacGGUGcAGCGCCgcuGCa -3'
miRNA:   3'- cGCGUCCGaGGG--------------CCAC-UUGUGGag-CG- -5'
6471 3' -58.2 NC_001847.1 + 82810 0.66 0.827264
Target:  5'- cGCGgAGcGCuuccaccagcguguuUCCCGGUuGGCGCCgccCGCg -3'
miRNA:   3'- -CGCgUC-CG---------------AGGGCCAcUUGUGGa--GCG- -5'
6471 3' -58.2 NC_001847.1 + 134668 0.66 0.823919
Target:  5'- gGCGCGGGCaCCCa-UGAcgGCGCCgaaGCu -3'
miRNA:   3'- -CGCGUCCGaGGGccACU--UGUGGag-CG- -5'
6471 3' -58.2 NC_001847.1 + 29542 0.66 0.823919
Target:  5'- gGCGCGGGCgCUCGaGUucccccgcacGGACGCCgUGCc -3'
miRNA:   3'- -CGCGUCCGaGGGC-CA----------CUUGUGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 106189 0.66 0.823919
Target:  5'- cCGCAGGCUCUgcaGGagGAACAgCuucuggUCGCa -3'
miRNA:   3'- cGCGUCCGAGGg--CCa-CUUGUgG------AGCG- -5'
6471 3' -58.2 NC_001847.1 + 3506 0.66 0.823919
Target:  5'- gGCGCcgucacGCUCCCGGUGAugAacgaGCu -3'
miRNA:   3'- -CGCGuc----CGAGGGCCACUugUggagCG- -5'
6471 3' -58.2 NC_001847.1 + 99024 0.66 0.823919
Target:  5'- cGCGCGcGGCUUCgUGGaaGGCGCCcagCGCg -3'
miRNA:   3'- -CGCGU-CCGAGG-GCCacUUGUGGa--GCG- -5'
6471 3' -58.2 NC_001847.1 + 67839 0.66 0.823919
Target:  5'- gGCG-GGGCUgCCGGcgcUGGcgcGCGgCUCGCg -3'
miRNA:   3'- -CGCgUCCGAgGGCC---ACU---UGUgGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 3376 0.66 0.823919
Target:  5'- cCGCAGGCUCUgcaGGagGAACAgCuucuggUCGCa -3'
miRNA:   3'- cGCGUCCGAGGg--CCa-CUUGUgG------AGCG- -5'
6471 3' -58.2 NC_001847.1 + 71147 0.66 0.823919
Target:  5'- cGgGUAGaGCUCgCGGcacuUGAGCGCCgcgaacagggugUCGCg -3'
miRNA:   3'- -CgCGUC-CGAGgGCC----ACUUGUGG------------AGCG- -5'
6471 3' -58.2 NC_001847.1 + 88577 0.66 0.823919
Target:  5'- gGCGCGagagauguaacGGCcgCgCGGcugGAGgACCUCGCg -3'
miRNA:   3'- -CGCGU-----------CCGa-GgGCCa--CUUgUGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 106319 0.66 0.823919
Target:  5'- gGCGCcgucacGCUCCCGGUGAugAacgaGCu -3'
miRNA:   3'- -CGCGuc----CGAGGGCCACUugUggagCG- -5'
6471 3' -58.2 NC_001847.1 + 78344 0.66 0.823919
Target:  5'- cGCGCcGGC-CCC-GUGAGCGCgaCGa -3'
miRNA:   3'- -CGCGuCCGaGGGcCACUUGUGgaGCg -5'
6471 3' -58.2 NC_001847.1 + 46907 0.66 0.823919
Target:  5'- aGCG-AGGCUUCgGG-GGGCGCgUCGg -3'
miRNA:   3'- -CGCgUCCGAGGgCCaCUUGUGgAGCg -5'
6471 3' -58.2 NC_001847.1 + 33449 0.66 0.823919
Target:  5'- uCGCGGGCgUCgCUGGaggcGAGCAUggCUCGCu -3'
miRNA:   3'- cGCGUCCG-AG-GGCCa---CUUGUG--GAGCG- -5'
6471 3' -58.2 NC_001847.1 + 20393 0.66 0.823919
Target:  5'- cGCgGguGGCUCaCCGGUGAuuagaaAgGCCaCGUu -3'
miRNA:   3'- -CG-CguCCGAG-GGCCACU------UgUGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 74049 0.66 0.823919
Target:  5'- gGCGCuGGCcuccuUCUCGGUcAACGgCgUCGCg -3'
miRNA:   3'- -CGCGuCCG-----AGGGCCAcUUGU-GgAGCG- -5'
6471 3' -58.2 NC_001847.1 + 40359 0.66 0.823079
Target:  5'- uGCGCGuggaggcGGCUCauguaGGcGcuCACCUCGCg -3'
miRNA:   3'- -CGCGU-------CCGAGgg---CCaCuuGUGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 51627 0.66 0.823079
Target:  5'- cCGCuGGGCuUCCUGGUGAAgcaguucCACCgcaaGCu -3'
miRNA:   3'- cGCG-UCCG-AGGGCCACUU-------GUGGag--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.