miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6471 3' -58.2 NC_001847.1 + 209 0.67 0.732804
Target:  5'- cCGCccccGGCgCCCGGgggcccGAGCccggGCCUCGCg -3'
miRNA:   3'- cGCGu---CCGaGGGCCa-----CUUG----UGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 1433 0.67 0.761431
Target:  5'- uGCGCGGGC-CCaggCGcGUGGcCACCguguagCGCa -3'
miRNA:   3'- -CGCGUCCGaGG---GC-CACUuGUGGa-----GCG- -5'
6471 3' -58.2 NC_001847.1 + 1790 0.69 0.647314
Target:  5'- aCGCAGG-UCCCGGgGAuguacuccucgaaagGCGCgUCGCc -3'
miRNA:   3'- cGCGUCCgAGGGCCaCU---------------UGUGgAGCG- -5'
6471 3' -58.2 NC_001847.1 + 2069 0.69 0.643277
Target:  5'- uGCGCAGGCgcaaguUCuuGGUGGcgaugaacuuGCACCaCGUu -3'
miRNA:   3'- -CGCGUCCG------AGggCCACU----------UGUGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 2107 0.69 0.653368
Target:  5'- gGCgGCGGGCcgcgaUCUCGGccAGCGCCUCGg -3'
miRNA:   3'- -CG-CGUCCG-----AGGGCCacUUGUGGAGCg -5'
6471 3' -58.2 NC_001847.1 + 2559 0.67 0.732804
Target:  5'- -gGCGGGCUgucUUCGGcgcGGGCGCCUgCGCg -3'
miRNA:   3'- cgCGUCCGA---GGGCCa--CUUGUGGA-GCG- -5'
6471 3' -58.2 NC_001847.1 + 3151 0.68 0.68351
Target:  5'- gGCGCcGGCggCgCGGcGGgccgccuccaGCGCCUCGCg -3'
miRNA:   3'- -CGCGuCCGa-GgGCCaCU----------UGUGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 3242 0.69 0.663443
Target:  5'- cGCGCcGuGCUCgCCGGcggcagGGGCGCCggCGCc -3'
miRNA:   3'- -CGCGuC-CGAG-GGCCa-----CUUGUGGa-GCG- -5'
6471 3' -58.2 NC_001847.1 + 3376 0.66 0.823919
Target:  5'- cCGCAGGCUCUgcaGGagGAACAgCuucuggUCGCa -3'
miRNA:   3'- cGCGUCCGAGGg--CCa-CUUGUgG------AGCG- -5'
6471 3' -58.2 NC_001847.1 + 3407 0.69 0.633177
Target:  5'- aGCaGCGGGagagcagCCCGG-GGGCGCCaggCGCa -3'
miRNA:   3'- -CG-CGUCCga-----GGGCCaCUUGUGGa--GCG- -5'
6471 3' -58.2 NC_001847.1 + 3506 0.66 0.823919
Target:  5'- gGCGCcgucacGCUCCCGGUGAugAacgaGCu -3'
miRNA:   3'- -CGCGuc----CGAGGGCCACUugUggagCG- -5'
6471 3' -58.2 NC_001847.1 + 3824 0.7 0.602902
Target:  5'- gGCGC--GCUgCCGGgccACGCCUCGCc -3'
miRNA:   3'- -CGCGucCGAgGGCCacuUGUGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 3879 0.67 0.742443
Target:  5'- uGCGCA-GCUCCCaGcgGAGCgaGCCguugCGCg -3'
miRNA:   3'- -CGCGUcCGAGGGcCa-CUUG--UGGa---GCG- -5'
6471 3' -58.2 NC_001847.1 + 3913 0.75 0.325824
Target:  5'- aGCGCGGGCg-CCGGuUGcGCGCC-CGCg -3'
miRNA:   3'- -CGCGUCCGagGGCC-ACuUGUGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 3994 0.67 0.761431
Target:  5'- gGCGCGcGGC-CCCGcG-GGGCGCCggGCc -3'
miRNA:   3'- -CGCGU-CCGaGGGC-CaCUUGUGGagCG- -5'
6471 3' -58.2 NC_001847.1 + 4626 0.7 0.591839
Target:  5'- gGCGCGGGCggCCCGccGGcgcucgcGCGCCUCaGCc -3'
miRNA:   3'- -CGCGUCCGa-GGGCcaCU-------UGUGGAG-CG- -5'
6471 3' -58.2 NC_001847.1 + 5243 0.67 0.742443
Target:  5'- cGUGCAGGuCUCCgCGGgggaggGGGCGCUUgagGCg -3'
miRNA:   3'- -CGCGUCC-GAGG-GCCa-----CUUGUGGAg--CG- -5'
6471 3' -58.2 NC_001847.1 + 5779 0.67 0.779972
Target:  5'- aGCGC-GGCgucuagcCCCGGgcccGGCACCgCGCu -3'
miRNA:   3'- -CGCGuCCGa------GGGCCac--UUGUGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 6094 0.7 0.582813
Target:  5'- cGCGgAGGCgcgagacgCCCGcgaggcgcggcGcGAGCGCCUCGCc -3'
miRNA:   3'- -CGCgUCCGa-------GGGC-----------CaCUUGUGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 6169 0.71 0.513902
Target:  5'- cGCGCAGGUgCUCGGUGAucuGCCg-GCg -3'
miRNA:   3'- -CGCGUCCGaGGGCCACUug-UGGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.