miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6471 3' -58.2 NC_001847.1 + 82908 0.73 0.439588
Target:  5'- gGCGCGcGGCgCCCGG-GGGCuuuuUCUCGCu -3'
miRNA:   3'- -CGCGU-CCGaGGGCCaCUUGu---GGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 54822 0.74 0.379866
Target:  5'- aGCGCGGGCa--CGGUGGuggacaaccGCGCCUCGg -3'
miRNA:   3'- -CGCGUCCGaggGCCACU---------UGUGGAGCg -5'
6471 3' -58.2 NC_001847.1 + 66885 0.74 0.388061
Target:  5'- cGCGCGGGUacucgucggUCCCGGUGuuuuAGCGCg-CGCg -3'
miRNA:   3'- -CGCGUCCG---------AGGGCCAC----UUGUGgaGCG- -5'
6471 3' -58.2 NC_001847.1 + 132011 0.73 0.396371
Target:  5'- gGCGCcgccGGGCUCCCGGUGcucuCGgC-CGCg -3'
miRNA:   3'- -CGCG----UCCGAGGGCCACuu--GUgGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 18633 0.73 0.404794
Target:  5'- aGCGCAGGCagaggugCUCGGcGAGCGCgaCGCc -3'
miRNA:   3'- -CGCGUCCGa------GGGCCaCUUGUGgaGCG- -5'
6471 3' -58.2 NC_001847.1 + 36972 0.73 0.404794
Target:  5'- aGCGCGGGCg-CCGGcGAGCggGCC-CGCg -3'
miRNA:   3'- -CGCGUCCGagGGCCaCUUG--UGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 133060 0.73 0.404794
Target:  5'- cGCGCGGGC-CCCGcG-GGGCG-CUCGCc -3'
miRNA:   3'- -CGCGUCCGaGGGC-CaCUUGUgGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 16358 0.73 0.41333
Target:  5'- gGCGCuggcGGCUgCCGGUGccgcucACACCgCGCg -3'
miRNA:   3'- -CGCGu---CCGAgGGCCACu-----UGUGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 36241 0.73 0.430729
Target:  5'- cGCGCAGGUugccgagcUCCCGGccUGGGcCGCCcaggCGCa -3'
miRNA:   3'- -CGCGUCCG--------AGGGCC--ACUU-GUGGa---GCG- -5'
6471 3' -58.2 NC_001847.1 + 134867 0.74 0.355987
Target:  5'- cGCGCGGGCUcggcggccCCCGGgcucgggccccUGGGCGCCggGCg -3'
miRNA:   3'- -CGCGUCCGA--------GGGCC-----------ACUUGUGGagCG- -5'
6471 3' -58.2 NC_001847.1 + 124609 0.75 0.340664
Target:  5'- gGCGCGGGUccccgggCCCGGggaaGAACACgUCGUc -3'
miRNA:   3'- -CGCGUCCGa------GGGCCa---CUUGUGgAGCG- -5'
6471 3' -58.2 NC_001847.1 + 55683 0.75 0.340664
Target:  5'- cGCGCAGGCggCCGGgGAAaa-CUCGCg -3'
miRNA:   3'- -CGCGUCCGagGGCCaCUUgugGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 45697 0.79 0.180001
Target:  5'- gGCGUAGGCcUCCGGUGGGCGgCUCaGCu -3'
miRNA:   3'- -CGCGUCCGaGGGCCACUUGUgGAG-CG- -5'
6471 3' -58.2 NC_001847.1 + 117397 0.78 0.208634
Target:  5'- uCGCGGGUUUCggugcgcgCGGUGGACGCUUCGCg -3'
miRNA:   3'- cGCGUCCGAGG--------GCCACUUGUGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 70472 0.78 0.213773
Target:  5'- cGCGCGGGCgCCCGGUGGAUGgCgUGCu -3'
miRNA:   3'- -CGCGUCCGaGGGCCACUUGUgGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 80239 0.78 0.213773
Target:  5'- cCGCGaGCUCCCGG-GAaacguGCGCCUCGCc -3'
miRNA:   3'- cGCGUcCGAGGGCCaCU-----UGUGGAGCG- -5'
6471 3' -58.2 NC_001847.1 + 38585 0.78 0.224376
Target:  5'- cGCGgAGGCUCCUGGcguUGAGCGCg-CGCg -3'
miRNA:   3'- -CGCgUCCGAGGGCC---ACUUGUGgaGCG- -5'
6471 3' -58.2 NC_001847.1 + 63813 0.76 0.265037
Target:  5'- uGCGCAaugcuuacGcGCUCCUGGUGAACACgUgCGCu -3'
miRNA:   3'- -CGCGU--------C-CGAGGGCCACUUGUGgA-GCG- -5'
6471 3' -58.2 NC_001847.1 + 106726 0.75 0.325824
Target:  5'- aGCGCGGGCg-CCGGuUGcGCGCC-CGCg -3'
miRNA:   3'- -CGCGUCCGagGGCC-ACuUGUGGaGCG- -5'
6471 3' -58.2 NC_001847.1 + 66182 0.75 0.325824
Target:  5'- cGCGCGGGC-CgCGcUGGACGCCUgGCu -3'
miRNA:   3'- -CGCGUCCGaGgGCcACUUGUGGAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.