miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6471 5' -51 NC_001847.1 + 118664 0.66 0.984581
Target:  5'- gAGGCgcaagaGAGG-UGUCCGCGcucugcgccgcGGGCCUCg -3'
miRNA:   3'- -UUCGa-----UUCCaACAGGUGCa----------UUCGGAG- -5'
6471 5' -51 NC_001847.1 + 95636 0.66 0.982581
Target:  5'- aAGGCUgcGAGG-UGUUCACcggGAGCCUg -3'
miRNA:   3'- -UUCGA--UUCCaACAGGUGca-UUCGGAg -5'
6471 5' -51 NC_001847.1 + 47813 0.66 0.980392
Target:  5'- cGGCUccAGGUUGUCCGCGgu-GCa-- -3'
miRNA:   3'- uUCGAu-UCCAACAGGUGCauuCGgag -5'
6471 5' -51 NC_001847.1 + 12663 0.66 0.980392
Target:  5'- gGAGCguggugGAGGagcUGUUUACGUAcgccccugcccAGCCUCa -3'
miRNA:   3'- -UUCGa-----UUCCa--ACAGGUGCAU-----------UCGGAG- -5'
6471 5' -51 NC_001847.1 + 126119 0.66 0.978004
Target:  5'- gGAGCUcGGGUgggGUCCcgaGUGAGCUcCg -3'
miRNA:   3'- -UUCGAuUCCAa--CAGGug-CAUUCGGaG- -5'
6471 5' -51 NC_001847.1 + 23306 0.66 0.978004
Target:  5'- gGAGCUcGGGUgggGUCCcgaGUGAGCUcCg -3'
miRNA:   3'- -UUCGAuUCCAa--CAGGug-CAUUCGGaG- -5'
6471 5' -51 NC_001847.1 + 122574 0.67 0.962775
Target:  5'- -cGCUcuAGGUg---CGCGUAGGCCUCg -3'
miRNA:   3'- uuCGAu-UCCAacagGUGCAUUCGGAG- -5'
6471 5' -51 NC_001847.1 + 11178 0.68 0.950737
Target:  5'- gGAGCUGGGGcugccgcugGUCCGCGcgGGGCUggUCg -3'
miRNA:   3'- -UUCGAUUCCaa-------CAGGUGCa-UUCGG--AG- -5'
6471 5' -51 NC_001847.1 + 62109 0.68 0.941409
Target:  5'- cAGC--AGGUUGUCCGCGgccgcuGCCg- -3'
miRNA:   3'- uUCGauUCCAACAGGUGCauu---CGGag -5'
6471 5' -51 NC_001847.1 + 114416 0.69 0.919519
Target:  5'- -cGUUGAGGUagaagcgGUCCGCcagcgGGGCCUCg -3'
miRNA:   3'- uuCGAUUCCAa------CAGGUGca---UUCGGAG- -5'
6471 5' -51 NC_001847.1 + 92450 0.7 0.899577
Target:  5'- cGGGCUggGAGG-UGUCCACGUcugagacgucaaaGAGCC-Cg -3'
miRNA:   3'- -UUCGA--UUCCaACAGGUGCA-------------UUCGGaG- -5'
6471 5' -51 NC_001847.1 + 89905 0.7 0.893309
Target:  5'- cGGCgcccGAGGUUGUgCCGCGcgAGGCCg- -3'
miRNA:   3'- uUCGa---UUCCAACA-GGUGCa-UUCGGag -5'
6471 5' -51 NC_001847.1 + 57400 0.76 0.579423
Target:  5'- -cGCUGGGGUagGUCCGgGcGGGCCUCg -3'
miRNA:   3'- uuCGAUUCCAa-CAGGUgCaUUCGGAG- -5'
6471 5' -51 NC_001847.1 + 39534 1.09 0.006093
Target:  5'- gAAGCUAAGGUUGUCCACGUAAGCCUCg -3'
miRNA:   3'- -UUCGAUUCCAACAGGUGCAUUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.