miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6472 3' -56.6 NC_001847.1 + 97810 0.66 0.870625
Target:  5'- uCGCGC-GCGUGGCcgcgucGGGC-GCGUGCc -3'
miRNA:   3'- -GUGCGaCGCGCUGu-----CCCGaUGCAUGu -5'
6472 3' -56.6 NC_001847.1 + 118753 0.66 0.870625
Target:  5'- gCGCgGCUGCGCGAgcGGGCgaACaUGCAa -3'
miRNA:   3'- -GUG-CGACGCGCUguCCCGa-UGcAUGU- -5'
6472 3' -56.6 NC_001847.1 + 127347 0.66 0.870625
Target:  5'- --gGCUGcCGCGGCAgGGGCgGCGggGCc -3'
miRNA:   3'- gugCGAC-GCGCUGU-CCCGaUGCa-UGu -5'
6472 3' -56.6 NC_001847.1 + 70242 0.66 0.870625
Target:  5'- aCGCGCgggGCggGCGGCGGGcGCgcgGCGuUGCu -3'
miRNA:   3'- -GUGCGa--CG--CGCUGUCC-CGa--UGC-AUGu -5'
6472 3' -56.6 NC_001847.1 + 24473 0.66 0.870625
Target:  5'- gCACGCaGCGCGGCAGGuugACGcugGCc -3'
miRNA:   3'- -GUGCGaCGCGCUGUCCcgaUGCa--UGu -5'
6472 3' -56.6 NC_001847.1 + 69481 0.66 0.870625
Target:  5'- --aGCUGCGCGAUGGuGCggGCGcGCAc -3'
miRNA:   3'- gugCGACGCGCUGUCcCGa-UGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 13422 0.66 0.870625
Target:  5'- aGCGCU-CGCGgaGCGGGGcCUGCGcugGCu -3'
miRNA:   3'- gUGCGAcGCGC--UGUCCC-GAUGCa--UGu -5'
6472 3' -56.6 NC_001847.1 + 67817 0.66 0.870625
Target:  5'- gAUGCUGCuGCaccuauacgccGGCGGGGCUGCcgGCGc -3'
miRNA:   3'- gUGCGACG-CG-----------CUGUCCCGAUGcaUGU- -5'
6472 3' -56.6 NC_001847.1 + 115667 0.66 0.870625
Target:  5'- uCGCGUccgUGCGgGugAGcGGCUGCGcggggGCGa -3'
miRNA:   3'- -GUGCG---ACGCgCugUC-CCGAUGCa----UGU- -5'
6472 3' -56.6 NC_001847.1 + 72016 0.66 0.868389
Target:  5'- cCugGUgcacaaccgacccgUGCGCGGCGGcGGCcccgggGCGUACc -3'
miRNA:   3'- -GugCG--------------ACGCGCUGUC-CCGa-----UGCAUGu -5'
6472 3' -56.6 NC_001847.1 + 5212 0.66 0.863097
Target:  5'- aGCGC-GcCGCGACGGaagcugcgcauGGCUcCGUGCAg -3'
miRNA:   3'- gUGCGaC-GCGCUGUC-----------CCGAuGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 5562 0.66 0.863097
Target:  5'- aGCaGCgGCaGCGGCAGGuGUUGCaGUACGg -3'
miRNA:   3'- gUG-CGaCG-CGCUGUCC-CGAUG-CAUGU- -5'
6472 3' -56.6 NC_001847.1 + 36828 0.66 0.863097
Target:  5'- gGCGC-GC-CGACugGGGGCUggcggACGUGCGc -3'
miRNA:   3'- gUGCGaCGcGCUG--UCCCGA-----UGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 108375 0.66 0.863097
Target:  5'- aGCaGCgGCaGCGGCAGGuGUUGCaGUACGg -3'
miRNA:   3'- gUG-CGaCG-CGCUGUCC-CGAUG-CAUGU- -5'
6472 3' -56.6 NC_001847.1 + 88631 0.66 0.863097
Target:  5'- gCGCGCacgUGCGCGAgAGccuGCUcaGCGUGCu -3'
miRNA:   3'- -GUGCG---ACGCGCUgUCc--CGA--UGCAUGu -5'
6472 3' -56.6 NC_001847.1 + 89044 0.66 0.863097
Target:  5'- gCGCGCUGgGCGACGgcauggcgcgccGGGUUuCGgcgGCGc -3'
miRNA:   3'- -GUGCGACgCGCUGU------------CCCGAuGCa--UGU- -5'
6472 3' -56.6 NC_001847.1 + 132146 0.66 0.863097
Target:  5'- gGCGCUGCugccGCG-CAGGGUggggccgGCGaACAu -3'
miRNA:   3'- gUGCGACG----CGCuGUCCCGa------UGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 42738 0.66 0.863097
Target:  5'- cCGCGC-GgGCGGCGGGGCggACa-GCAg -3'
miRNA:   3'- -GUGCGaCgCGCUGUCCCGa-UGcaUGU- -5'
6472 3' -56.6 NC_001847.1 + 103772 0.66 0.863097
Target:  5'- gACGaCUGCGCcggcacccggccGGCGGGGCUuccgccgccgGCGgcgGCAc -3'
miRNA:   3'- gUGC-GACGCG------------CUGUCCCGA----------UGCa--UGU- -5'
6472 3' -56.6 NC_001847.1 + 86114 0.66 0.862333
Target:  5'- gCACGCUGCacgagcggcuccGCGACGcGGcGCUgccggcuuucgcgACGUACu -3'
miRNA:   3'- -GUGCGACG------------CGCUGU-CC-CGA-------------UGCAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.