miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6472 3' -56.6 NC_001847.1 + 39110 1.08 0.002372
Target:  5'- aCACGCUGCGCGACAGGGCUACGUACAc -3'
miRNA:   3'- -GUGCGACGCGCUGUCCCGAUGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 86436 0.9 0.044116
Target:  5'- gGCGCUGCGCGGCGcGGGCaGCGUGCAc -3'
miRNA:   3'- gUGCGACGCGCUGU-CCCGaUGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 51660 0.82 0.139876
Target:  5'- gGCGCUGCGCccgcaACAGGGCgGCGUACGc -3'
miRNA:   3'- gUGCGACGCGc----UGUCCCGaUGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 21749 0.78 0.236049
Target:  5'- cUACGCUGcCGCGACgugcuggcgucgcuGGGGCUcACGUACGg -3'
miRNA:   3'- -GUGCGAC-GCGCUG--------------UCCCGA-UGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 36184 0.76 0.316244
Target:  5'- gGCGgUGCGCGGCGaGGCcGCGUACGa -3'
miRNA:   3'- gUGCgACGCGCUGUcCCGaUGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 28957 0.76 0.331076
Target:  5'- gACGCUGgcCGCGGCGGGGUUuacgccgggaACGUGCGc -3'
miRNA:   3'- gUGCGAC--GCGCUGUCCCGA----------UGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 96360 0.76 0.338682
Target:  5'- aCGCGCUGC-CGGCAGGGaCgcuCGUGCu -3'
miRNA:   3'- -GUGCGACGcGCUGUCCC-Gau-GCAUGu -5'
6472 3' -56.6 NC_001847.1 + 5881 0.75 0.346414
Target:  5'- aGCGCUGCGCG-CAGGGCggccGCGccgucGCAg -3'
miRNA:   3'- gUGCGACGCGCuGUCCCGa---UGCa----UGU- -5'
6472 3' -56.6 NC_001847.1 + 29070 0.75 0.346414
Target:  5'- uGgGCUGCGUGGCGGuGGCgggcgGCGUGCu -3'
miRNA:   3'- gUgCGACGCGCUGUC-CCGa----UGCAUGu -5'
6472 3' -56.6 NC_001847.1 + 35997 0.75 0.349542
Target:  5'- cCGCGCUGCagGCGGCcgcgggcguggugcuGGGGCUGCGcGCGg -3'
miRNA:   3'- -GUGCGACG--CGCUG---------------UCCCGAUGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 104535 0.75 0.354271
Target:  5'- gGCGCUGCGCGGCggccccGGGGCcgcUACGcgGCGg -3'
miRNA:   3'- gUGCGACGCGCUG------UCCCG---AUGCa-UGU- -5'
6472 3' -56.6 NC_001847.1 + 99847 0.75 0.362254
Target:  5'- gCGCGCcGCuCGGCGGGGCUGCGcagUACGu -3'
miRNA:   3'- -GUGCGaCGcGCUGUCCCGAUGC---AUGU- -5'
6472 3' -56.6 NC_001847.1 + 60848 0.75 0.362254
Target:  5'- gGCGCUGCGCGGCgccAGGGCguccagcGCGggGCGg -3'
miRNA:   3'- gUGCGACGCGCUG---UCCCGa------UGCa-UGU- -5'
6472 3' -56.6 NC_001847.1 + 46452 0.75 0.362254
Target:  5'- gCGCGCaGCGcCGcCAGGGCacuUACGUACAg -3'
miRNA:   3'- -GUGCGaCGC-GCuGUCCCG---AUGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 14642 0.75 0.369544
Target:  5'- gGCGCUcGCGCGccgcucgcugcgaGCGGGGCgcgugucgGCGUGCAg -3'
miRNA:   3'- gUGCGA-CGCGC-------------UGUCCCGa-------UGCAUGU- -5'
6472 3' -56.6 NC_001847.1 + 112043 0.74 0.412712
Target:  5'- gACGCggugGCGCG-CGcGGGCUACGUAgAg -3'
miRNA:   3'- gUGCGa---CGCGCuGU-CCCGAUGCAUgU- -5'
6472 3' -56.6 NC_001847.1 + 89608 0.74 0.412712
Target:  5'- aCGCGCUGCGCGGCAcGGCccCGUccGCGc -3'
miRNA:   3'- -GUGCGACGCGCUGUcCCGauGCA--UGU- -5'
6472 3' -56.6 NC_001847.1 + 89988 0.74 0.412712
Target:  5'- -gUGCUGCGCGccGCGGGGCUGCa---- -3'
miRNA:   3'- guGCGACGCGC--UGUCCCGAUGcaugu -5'
6472 3' -56.6 NC_001847.1 + 34157 0.74 0.430471
Target:  5'- gCGCGCUGCGCGAgGcGGCUgagGCGcUGCGg -3'
miRNA:   3'- -GUGCGACGCGCUgUcCCGA---UGC-AUGU- -5'
6472 3' -56.6 NC_001847.1 + 66402 0.73 0.44867
Target:  5'- aCGCGCgcacaucCGCGGCGcGGGCUgACGUACAc -3'
miRNA:   3'- -GUGCGac-----GCGCUGU-CCCGA-UGCAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.