miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6472 3' -56.6 NC_001847.1 + 53701 0.66 0.862333
Target:  5'- gCGCGCgaGCGCGccgccggcggcucGCGGGGCggaucgGCGcGCGg -3'
miRNA:   3'- -GUGCGa-CGCGC-------------UGUCCCGa-----UGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 86114 0.66 0.862333
Target:  5'- gCACGCUGCacgagcggcuccGCGACGcGGcGCUgccggcuuucgcgACGUACu -3'
miRNA:   3'- -GUGCGACG------------CGCUGU-CC-CGA-------------UGCAUGu -5'
6472 3' -56.6 NC_001847.1 + 959 0.66 0.862333
Target:  5'- gACGaCUGCGCcggcacccgggccGGCGGGGCUuccgccGCGgcgGCGg -3'
miRNA:   3'- gUGC-GACGCG-------------CUGUCCCGA------UGCa--UGU- -5'
6472 3' -56.6 NC_001847.1 + 15055 0.66 0.860798
Target:  5'- gGCGCUuuaucucccgccccGCGCGGCucggcaggagccGGGGCUAgGaGCAa -3'
miRNA:   3'- gUGCGA--------------CGCGCUG------------UCCCGAUgCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 105703 0.66 0.858479
Target:  5'- cCGCGCcGCGCGucgaguaccgcgcgaGCGGGGCcACGguccGCGc -3'
miRNA:   3'- -GUGCGaCGCGC---------------UGUCCCGaUGCa---UGU- -5'
6472 3' -56.6 NC_001847.1 + 2890 0.66 0.858479
Target:  5'- cCGCGCcGCGCGucgaguaccgcgcgaGCGGGGCcACGguccGCGc -3'
miRNA:   3'- -GUGCGaCGCGC---------------UGUCCCGaUGCa---UGU- -5'
6472 3' -56.6 NC_001847.1 + 101818 0.66 0.855359
Target:  5'- uCACGCaGCGCGccgccacgaacaACAGG-CUGCGcACAa -3'
miRNA:   3'- -GUGCGaCGCGC------------UGUCCcGAUGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 60965 0.66 0.855359
Target:  5'- gGCGCcGCGCGGCAuGGGCcccACGc--- -3'
miRNA:   3'- gUGCGaCGCGCUGU-CCCGa--UGCaugu -5'
6472 3' -56.6 NC_001847.1 + 37697 0.66 0.855359
Target:  5'- gGCGCgGCuGCGGCGcGcGGCUGCGcaGCAa -3'
miRNA:   3'- gUGCGaCG-CGCUGU-C-CCGAUGCa-UGU- -5'
6472 3' -56.6 NC_001847.1 + 8369 0.66 0.855359
Target:  5'- aCACGUaggGCGCGGCAgcguGGGCgucugccGCGUAg- -3'
miRNA:   3'- -GUGCGa--CGCGCUGU----CCCGa------UGCAUgu -5'
6472 3' -56.6 NC_001847.1 + 15239 0.66 0.855359
Target:  5'- aCGCGCcgGCgGCGGCGGcGGCcACGcACGc -3'
miRNA:   3'- -GUGCGa-CG-CGCUGUC-CCGaUGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 21644 0.66 0.855359
Target:  5'- cCGCGCccggGCGCGACcggAGGGCgagccccccgGCG-ACGg -3'
miRNA:   3'- -GUGCGa---CGCGCUG---UCCCGa---------UGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 6700 0.66 0.855359
Target:  5'- gGCGC-GCGCG-CAGGGCcgaGCGcACu -3'
miRNA:   3'- gUGCGaCGCGCuGUCCCGa--UGCaUGu -5'
6472 3' -56.6 NC_001847.1 + 116459 0.66 0.855359
Target:  5'- gACGCgggccGUGCuGCGGGGCcucGCGUACc -3'
miRNA:   3'- gUGCGa----CGCGcUGUCCCGa--UGCAUGu -5'
6472 3' -56.6 NC_001847.1 + 124457 0.66 0.855359
Target:  5'- cCGCGCccggGCGCGACcggAGGGCgagccccccgGCG-ACGg -3'
miRNA:   3'- -GUGCGa---CGCGCUG---UCCCGa---------UGCaUGU- -5'
6472 3' -56.6 NC_001847.1 + 79384 0.66 0.854573
Target:  5'- gGCaGC-GCGCGGCucgccguGGGGCUgagcGCGUACu -3'
miRNA:   3'- gUG-CGaCGCGCUG-------UCCCGA----UGCAUGu -5'
6472 3' -56.6 NC_001847.1 + 67271 0.66 0.854573
Target:  5'- aACGCUaaacgagGCGCG-CGGGGaCUugGUGg- -3'
miRNA:   3'- gUGCGA-------CGCGCuGUCCC-GAugCAUgu -5'
6472 3' -56.6 NC_001847.1 + 89932 0.66 0.847414
Target:  5'- cCGCGCU-CGCGGCGGcGCUcGCGcUGCGa -3'
miRNA:   3'- -GUGCGAcGCGCUGUCcCGA-UGC-AUGU- -5'
6472 3' -56.6 NC_001847.1 + 72957 0.66 0.847414
Target:  5'- gCACGC-GCGCGugGaccucggcguGGGCUACacgGCGg -3'
miRNA:   3'- -GUGCGaCGCGCugU----------CCCGAUGca-UGU- -5'
6472 3' -56.6 NC_001847.1 + 80017 0.66 0.847414
Target:  5'- gCGCGCguuugGCGCGGgGGGGgUcgGCGU-CAu -3'
miRNA:   3'- -GUGCGa----CGCGCUgUCCCgA--UGCAuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.