miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6472 5' -57.5 NC_001847.1 + 68225 0.66 0.828775
Target:  5'- gGCCGCGGcGgggCCGcaagcacgcuugcauCaGCGCGAAGCAc -3'
miRNA:   3'- -CGGCGUC-CaaaGGC---------------G-CGCGCUUCGUa -5'
6472 5' -57.5 NC_001847.1 + 13371 0.66 0.825376
Target:  5'- aGCCGCGaacGGcgcgcacgUCCGgGCGCGccGCGg -3'
miRNA:   3'- -CGGCGU---CCaa------AGGCgCGCGCuuCGUa -5'
6472 5' -57.5 NC_001847.1 + 88178 0.66 0.825376
Target:  5'- uGCUGCGcuuGGc--CCGgGCGCGggGCu- -3'
miRNA:   3'- -CGGCGU---CCaaaGGCgCGCGCuuCGua -5'
6472 5' -57.5 NC_001847.1 + 121169 0.66 0.825376
Target:  5'- aGCCGCGGa----CGUGCGCGAcauGCGg -3'
miRNA:   3'- -CGGCGUCcaaagGCGCGCGCUu--CGUa -5'
6472 5' -57.5 NC_001847.1 + 87264 0.66 0.825376
Target:  5'- gGCgCGCGGGcg--CGCGCGCGcuGCGc -3'
miRNA:   3'- -CG-GCGUCCaaagGCGCGCGCuuCGUa -5'
6472 5' -57.5 NC_001847.1 + 29030 0.66 0.825376
Target:  5'- cGCC-CAGag--CCGCGCGCGccGGCAg -3'
miRNA:   3'- -CGGcGUCcaaaGGCGCGCGCu-UCGUa -5'
6472 5' -57.5 NC_001847.1 + 91791 0.66 0.824522
Target:  5'- gGCCGCGGacgcuucgucggcGUcgcgCCGCGCGgCGAuGGCAg -3'
miRNA:   3'- -CGGCGUC-------------CAaa--GGCGCGC-GCU-UCGUa -5'
6472 5' -57.5 NC_001847.1 + 106794 0.66 0.816755
Target:  5'- cGCCGgGGGc--CCGgGCGCGcGGCc- -3'
miRNA:   3'- -CGGCgUCCaaaGGCgCGCGCuUCGua -5'
6472 5' -57.5 NC_001847.1 + 70706 0.66 0.816755
Target:  5'- gGCgGCGGGggcgcCCGCggcgaGCGCGAGGaCAg -3'
miRNA:   3'- -CGgCGUCCaaa--GGCG-----CGCGCUUC-GUa -5'
6472 5' -57.5 NC_001847.1 + 11456 0.66 0.816755
Target:  5'- cGCCaGCGGcua-CCGUGCGCGuGGCGa -3'
miRNA:   3'- -CGG-CGUCcaaaGGCGCGCGCuUCGUa -5'
6472 5' -57.5 NC_001847.1 + 68790 0.66 0.816755
Target:  5'- cGCCGCGGcGg--CCGCGCGagcGGGCc- -3'
miRNA:   3'- -CGGCGUC-CaaaGGCGCGCgc-UUCGua -5'
6472 5' -57.5 NC_001847.1 + 131261 0.66 0.816755
Target:  5'- cGCCGCGGcg--CCGCGCGaCG-GGCc- -3'
miRNA:   3'- -CGGCGUCcaaaGGCGCGC-GCuUCGua -5'
6472 5' -57.5 NC_001847.1 + 133734 0.66 0.816755
Target:  5'- aCCGC-GGUgcccgugCCGcCGCGCGAguaccGGCAg -3'
miRNA:   3'- cGGCGuCCAaa-----GGC-GCGCGCU-----UCGUa -5'
6472 5' -57.5 NC_001847.1 + 80189 0.66 0.816755
Target:  5'- cGCCGCcucugcgggcGGGUg--CGC-CGCGAAGCGc -3'
miRNA:   3'- -CGGCG----------UCCAaagGCGcGCGCUUCGUa -5'
6472 5' -57.5 NC_001847.1 + 28448 0.66 0.816755
Target:  5'- cGCCGCGGcg--CCGCGCGaCG-GGCc- -3'
miRNA:   3'- -CGGCGUCcaaaGGCGCGC-GCuUCGua -5'
6472 5' -57.5 NC_001847.1 + 2184 0.66 0.816755
Target:  5'- cGCCGCcuGGg--CgGCGUGCGGGcGCAc -3'
miRNA:   3'- -CGGCGu-CCaaaGgCGCGCGCUU-CGUa -5'
6472 5' -57.5 NC_001847.1 + 132575 0.66 0.816755
Target:  5'- gGCCGCgcAGGcgcCCGCGC-CGAAGaCAg -3'
miRNA:   3'- -CGGCG--UCCaaaGGCGCGcGCUUC-GUa -5'
6472 5' -57.5 NC_001847.1 + 52015 0.66 0.813258
Target:  5'- cGCCGCGGcGg--CCGCcgaggaggugcuaCGCGAGGCGg -3'
miRNA:   3'- -CGGCGUC-CaaaGGCGc------------GCGCUUCGUa -5'
6472 5' -57.5 NC_001847.1 + 105989 0.66 0.8115
Target:  5'- gGgUGCAGGUUUgCgauaguggccguguaGUGCGCGAGGUAg -3'
miRNA:   3'- -CgGCGUCCAAAgG---------------CGCGCGCUUCGUa -5'
6472 5' -57.5 NC_001847.1 + 131347 0.66 0.807963
Target:  5'- cGCCGCccGg--CCGCGUGCGcuucGGCGg -3'
miRNA:   3'- -CGGCGucCaaaGGCGCGCGCu---UCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.