miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 3' -48.6 NC_001847.1 + 34390 0.66 0.998754
Target:  5'- aCGGcGgccgc-CGCCGCGGCAgACGCGg -3'
miRNA:   3'- -GCCaCauauauGUGGCGCUGU-UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 91807 0.66 0.998754
Target:  5'- uCGGcGUc---GCGCCGCGcggcgaugGCAGCACGg -3'
miRNA:   3'- -GCCaCAuauaUGUGGCGC--------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 58273 0.66 0.999324
Target:  5'- aGGccuccAUGUGCucgGCCGCGGCGACGgCGg -3'
miRNA:   3'- gCCaca--UAUAUG---UGGCGCUGUUGU-GC- -5'
6473 3' -48.6 NC_001847.1 + 30715 0.66 0.998778
Target:  5'- gCGGUGcugccgcggcgcaGUGCGCCGCGcgcuggcccgaGCGGCGCGc -3'
miRNA:   3'- -GCCACaua----------UAUGUGGCGC-----------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 30407 0.66 0.998957
Target:  5'- cCGaGUGgccgccGCGCCGCGGCGggcucucGCACGc -3'
miRNA:   3'- -GC-CACauaua-UGUGGCGCUGU-------UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 41725 0.66 0.998754
Target:  5'- gGGcGUGUAcaGCGCCGUGcGCuGCACGg -3'
miRNA:   3'- gCCaCAUAUa-UGUGGCGC-UGuUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 31161 0.66 0.998978
Target:  5'- gCGGUGgccuu-CugCGCGGCcGCGCu -3'
miRNA:   3'- -GCCACauauauGugGCGCUGuUGUGc -5'
6473 3' -48.6 NC_001847.1 + 20848 0.66 0.998489
Target:  5'- gCGGUcgcaaagcGaGUcUGCGCUGCGGCGGCGCu -3'
miRNA:   3'- -GCCA--------CaUAuAUGUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 31478 0.66 0.998489
Target:  5'- uCGGUGUcuuucGCGCCG--GCGACGCGg -3'
miRNA:   3'- -GCCACAuaua-UGUGGCgcUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 26976 0.66 0.999057
Target:  5'- aGGUGcgcgcgcagcGCGuCUGCGGCGGCGCGg -3'
miRNA:   3'- gCCACauaua-----UGU-GGCGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 80368 0.66 0.998754
Target:  5'- gCGGcGUGcgcaaaacccauUAUGCACCGCcACGuACACGu -3'
miRNA:   3'- -GCCaCAU------------AUAUGUGGCGcUGU-UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 100998 0.67 0.997816
Target:  5'- aGGUGc-----CGCCGCGGCGGCAg- -3'
miRNA:   3'- gCCACauauauGUGGCGCUGUUGUgc -5'
6473 3' -48.6 NC_001847.1 + 31202 0.67 0.997256
Target:  5'- aCGGUGcucucgcugaggGCGCgGCGugGGCGCGc -3'
miRNA:   3'- -GCCACauaua-------UGUGgCGCugUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 5872 0.67 0.998179
Target:  5'- aGGUGguccaGCGCUGCGcGCAGgGCGg -3'
miRNA:   3'- gCCACauauaUGUGGCGC-UGUUgUGC- -5'
6473 3' -48.6 NC_001847.1 + 35036 0.67 0.997395
Target:  5'- gCGGUugAUGcACAUCGCGACGGgGCu -3'
miRNA:   3'- -GCCAcaUAUaUGUGGCGCUGUUgUGc -5'
6473 3' -48.6 NC_001847.1 + 131251 0.67 0.997395
Target:  5'- gCGcUGgc--UACGCCGCGGCGccGCGCGa -3'
miRNA:   3'- -GCcACauauAUGUGGCGCUGU--UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 98143 0.67 0.997816
Target:  5'- aCGGUGagcgagGUGUuaagcagcagcACGCCGCGGC-GCGCc -3'
miRNA:   3'- -GCCACa-----UAUA-----------UGUGGCGCUGuUGUGc -5'
6473 3' -48.6 NC_001847.1 + 6660 0.67 0.997816
Target:  5'- uGGUGgAUGUagagcgaggcuAgGCCGCGGCGGC-CGg -3'
miRNA:   3'- gCCACaUAUA-----------UgUGGCGCUGUUGuGC- -5'
6473 3' -48.6 NC_001847.1 + 36385 0.67 0.997655
Target:  5'- cCGGgcagcgcGCGCCGCGGCGACGg- -3'
miRNA:   3'- -GCCacauauaUGUGGCGCUGUUGUgc -5'
6473 3' -48.6 NC_001847.1 + 75863 0.67 0.998179
Target:  5'- gCGGUGUugc-GCGCgGCGGCGucCAUGg -3'
miRNA:   3'- -GCCACAuauaUGUGgCGCUGUu-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.