miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 3' -48.6 NC_001847.1 + 30715 0.66 0.998778
Target:  5'- gCGGUGcugccgcggcgcaGUGCGCCGCGcgcuggcccgaGCGGCGCGc -3'
miRNA:   3'- -GCCACaua----------UAUGUGGCGC-----------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 133528 0.66 0.998778
Target:  5'- gCGGUGcugccgcggcgcaGUGCGCCGCGcgcuggcccgaGCGGCGCGc -3'
miRNA:   3'- -GCCACaua----------UAUGUGGCGC-----------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 41725 0.66 0.998754
Target:  5'- gGGcGUGUAcaGCGCCGUGcGCuGCACGg -3'
miRNA:   3'- gCCaCAUAUa-UGUGGCGC-UGuUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 122924 0.66 0.998754
Target:  5'- gGGUGUGcgcGCGCCGCG-CAagccagaaGCGCa -3'
miRNA:   3'- gCCACAUauaUGUGGCGCuGU--------UGUGc -5'
6473 3' -48.6 NC_001847.1 + 91807 0.66 0.998754
Target:  5'- uCGGcGUc---GCGCCGCGcggcgaugGCAGCACGg -3'
miRNA:   3'- -GCCaCAuauaUGUGGCGC--------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 80368 0.66 0.998754
Target:  5'- gCGGcGUGcgcaaaacccauUAUGCACCGCcACGuACACGu -3'
miRNA:   3'- -GCCaCAU------------AUAUGUGGCGcUGU-UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 34390 0.66 0.998754
Target:  5'- aCGGcGgccgc-CGCCGCGGCAgACGCGg -3'
miRNA:   3'- -GCCaCauauauGUGGCGCUGU-UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 88873 0.66 0.998754
Target:  5'- gCGGUGc----GCGCgGCGGCGGCGgCGg -3'
miRNA:   3'- -GCCACauauaUGUGgCGCUGUUGU-GC- -5'
6473 3' -48.6 NC_001847.1 + 93271 0.66 0.998754
Target:  5'- gCGGgccGUAUcGCGCCGCGaugucgGCGGCGCGc -3'
miRNA:   3'- -GCCacaUAUA-UGUGGCGC------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 20848 0.66 0.998489
Target:  5'- gCGGUcgcaaagcGaGUcUGCGCUGCGGCGGCGCu -3'
miRNA:   3'- -GCCA--------CaUAuAUGUGGCGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 31478 0.66 0.998489
Target:  5'- uCGGUGUcuuucGCGCCG--GCGACGCGg -3'
miRNA:   3'- -GCCACAuaua-UGUGGCgcUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 104874 0.67 0.998179
Target:  5'- -uGUGUcGUcUGCGCCGCGGC-GCGCu -3'
miRNA:   3'- gcCACA-UAuAUGUGGCGCUGuUGUGc -5'
6473 3' -48.6 NC_001847.1 + 89039 0.67 0.998179
Target:  5'- ---cGUGUGcGCGCUggGCGACGGCAUGg -3'
miRNA:   3'- gccaCAUAUaUGUGG--CGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 2213 0.67 0.998179
Target:  5'- gCGGcaGUAggccgccaGCGCCGCGGCGcuggGCGCGg -3'
miRNA:   3'- -GCCa-CAUaua-----UGUGGCGCUGU----UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 16325 0.67 0.998179
Target:  5'- gGGUGUAggcaagcuCACCGCaacggcgaGCAGCGCGc -3'
miRNA:   3'- gCCACAUauau----GUGGCGc-------UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 5872 0.67 0.998179
Target:  5'- aGGUGguccaGCGCUGCGcGCAGgGCGg -3'
miRNA:   3'- gCCACauauaUGUGGCGC-UGUUgUGC- -5'
6473 3' -48.6 NC_001847.1 + 75863 0.67 0.998179
Target:  5'- gCGGUGUugc-GCGCgGCGGCGucCAUGg -3'
miRNA:   3'- -GCCACAuauaUGUGgCGCUGUu-GUGC- -5'
6473 3' -48.6 NC_001847.1 + 58874 0.67 0.998179
Target:  5'- gCGGggcagGUACuGCUGCGGCAaGCACGg -3'
miRNA:   3'- -GCCacauaUAUG-UGGCGCUGU-UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 105026 0.67 0.998179
Target:  5'- gCGGcaGUAggccgccaGCGCCGCGGCGcuggGCGCGg -3'
miRNA:   3'- -GCCa-CAUaua-----UGUGGCGCUGU----UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 59178 0.67 0.998145
Target:  5'- uGGUgacGUAUAUaugcaacgagcacACGCCGCGugugGCGGCGCa -3'
miRNA:   3'- gCCA---CAUAUA-------------UGUGGCGC----UGUUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.