miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 3' -56.8 NC_001847.1 + 91997 0.66 0.864671
Target:  5'- aGCAGCGgaggaGUUccugcucccacagcCGCGAgagCcGCUCCACg -3'
miRNA:   3'- gCGUCGCg----CAA--------------GCGCUa--GuCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 62425 0.66 0.864671
Target:  5'- -uCAGCGCGUaggugagcguguuuUCGuCGGcgCGGCUCUGCg -3'
miRNA:   3'- gcGUCGCGCA--------------AGC-GCUa-GUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 66507 0.66 0.864671
Target:  5'- aGCGGCGCgGUggaggcgcgccgccUUGCGGUCcccGGC-CCGCu -3'
miRNA:   3'- gCGUCGCG-CA--------------AGCGCUAG---UCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 96459 0.66 0.86239
Target:  5'- aCGcCAGCGCGUgcaacucgcugagcuUgCGCGAg-GGCUCCGu -3'
miRNA:   3'- -GC-GUCGCGCA---------------A-GCGCUagUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 44579 0.66 0.859318
Target:  5'- gGCGGCuCGUcgucgcccUCGCGcgCGGCgagggCCGCc -3'
miRNA:   3'- gCGUCGcGCA--------AGCGCuaGUCGa----GGUG- -5'
6474 3' -56.8 NC_001847.1 + 33692 0.66 0.859318
Target:  5'- gCGCAG-GCGcUCGCGGcgCGGCggCGCg -3'
miRNA:   3'- -GCGUCgCGCaAGCGCUa-GUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 84202 0.66 0.859318
Target:  5'- aGCAGcCGC---UGCuGGUcCAGCUCCGCg -3'
miRNA:   3'- gCGUC-GCGcaaGCG-CUA-GUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 67346 0.66 0.859318
Target:  5'- aGCAucGCGCGgaCGUGGcccUCGGCUCUcCg -3'
miRNA:   3'- gCGU--CGCGCaaGCGCU---AGUCGAGGuG- -5'
6474 3' -56.8 NC_001847.1 + 28852 0.66 0.859318
Target:  5'- gCGCGGcCGCGcgCGCGAcgcCGGCggCGCu -3'
miRNA:   3'- -GCGUC-GCGCaaGCGCUa--GUCGagGUG- -5'
6474 3' -56.8 NC_001847.1 + 86501 0.66 0.859318
Target:  5'- aGCGGCGCugcaccgUCGCGcggCGGCUgggcgcCCGCg -3'
miRNA:   3'- gCGUCGCGca-----AGCGCua-GUCGA------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 17138 0.66 0.859318
Target:  5'- uCGCAGCGCagguugggcggGUggGCGGUUGGCgUCGCg -3'
miRNA:   3'- -GCGUCGCG-----------CAagCGCUAGUCGaGGUG- -5'
6474 3' -56.8 NC_001847.1 + 85979 0.66 0.859318
Target:  5'- aCGCccGGCGCGUgacCGUGGUCcGCgcgCCGa -3'
miRNA:   3'- -GCG--UCGCGCAa--GCGCUAGuCGa--GGUg -5'
6474 3' -56.8 NC_001847.1 + 48223 0.66 0.856213
Target:  5'- gCGCAGCGCcgccaccauggCGuCGAUCAGCUggcccucgUCGCg -3'
miRNA:   3'- -GCGUCGCGcaa--------GC-GCUAGUCGA--------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 4578 0.66 0.851494
Target:  5'- aGUGGUGCGggUCGCGGUgcgCGGCgacgaaggcggCCACg -3'
miRNA:   3'- gCGUCGCGCa-AGCGCUA---GUCGa----------GGUG- -5'
6474 3' -56.8 NC_001847.1 + 86587 0.66 0.851494
Target:  5'- gGCGGCGC-UUCGUucuuuacgCGGCUCCGg -3'
miRNA:   3'- gCGUCGCGcAAGCGcua-----GUCGAGGUg -5'
6474 3' -56.8 NC_001847.1 + 68065 0.66 0.851494
Target:  5'- uCGCGGCGCGccUGCGGcggGGCgaacgCCGCg -3'
miRNA:   3'- -GCGUCGCGCaaGCGCUag-UCGa----GGUG- -5'
6474 3' -56.8 NC_001847.1 + 30242 0.66 0.851494
Target:  5'- aGguGCGCGUgucgcUgGCGGcguugCAGCgcgCCGCg -3'
miRNA:   3'- gCguCGCGCA-----AgCGCUa----GUCGa--GGUG- -5'
6474 3' -56.8 NC_001847.1 + 115709 0.66 0.851494
Target:  5'- gGCAGCGgGcgCGCGGccuUUGGCgcucCCGCu -3'
miRNA:   3'- gCGUCGCgCaaGCGCU---AGUCGa---GGUG- -5'
6474 3' -56.8 NC_001847.1 + 86100 0.66 0.851494
Target:  5'- gCGCAGCuuuacGCGcaCGCugcacGAgCGGCUCCGCg -3'
miRNA:   3'- -GCGUCG-----CGCaaGCG-----CUaGUCGAGGUG- -5'
6474 3' -56.8 NC_001847.1 + 116960 0.66 0.851494
Target:  5'- uCGCcGCGCGUcCGCcAUgGGC-CCGCu -3'
miRNA:   3'- -GCGuCGCGCAaGCGcUAgUCGaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.