miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 5' -49.4 NC_001847.1 + 73072 0.66 0.997128
Target:  5'- cCGCGGG---CGCGGAAGUcg-ACGCg -3'
miRNA:   3'- aGCGCCUuugGCGCUUUCAugaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 56949 0.66 0.997128
Target:  5'- cCGCaGccGCCGCGAGAagcCUACGCa -3'
miRNA:   3'- aGCGcCuuUGGCGCUUUcauGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 50279 0.66 0.997128
Target:  5'- aUCGCGGucgccucgcacGAcuacuuccaccaGCUGCgGggGGUugUGCGCa -3'
miRNA:   3'- -AGCGCC-----------UU------------UGGCG-CuuUCAugAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 48425 0.66 0.997128
Target:  5'- cCGCGG--GCCGCGuGGAGUugaGCACc -3'
miRNA:   3'- aGCGCCuuUGGCGC-UUUCAugaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 38431 0.66 0.997128
Target:  5'- -gGCGGGAGCC-CGAGGGgcggGCAUc -3'
miRNA:   3'- agCGCCUUUGGcGCUUUCaugaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 56534 0.66 0.997078
Target:  5'- aCGUGGAAguGCCGCGgcGGcaGCUccagggaGCGCg -3'
miRNA:   3'- aGCGCCUU--UGGCGCuuUCa-UGA-------UGUG- -5'
6474 5' -49.4 NC_001847.1 + 88093 0.66 0.996599
Target:  5'- cCGCGccGGCCGCGAcacgcaccgcGAGUugUAuCGCc -3'
miRNA:   3'- aGCGCcuUUGGCGCU----------UUCAugAU-GUG- -5'
6474 5' -49.4 NC_001847.1 + 29226 0.66 0.996599
Target:  5'- cCGCGGcGGGCCGCGGccugccggccGcGgcCUGCGCg -3'
miRNA:   3'- aGCGCC-UUUGGCGCU----------UuCauGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 4537 0.66 0.996599
Target:  5'- cUCGCGGcgGCCGCccgcGGGUG--GCGCg -3'
miRNA:   3'- -AGCGCCuuUGGCGcu--UUCAUgaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 33373 0.66 0.996599
Target:  5'- -gGCGGAAggcgcuGCCGCcaaGAAGGaGCUGgACg -3'
miRNA:   3'- agCGCCUU------UGGCG---CUUUCaUGAUgUG- -5'
6474 5' -49.4 NC_001847.1 + 27981 0.66 0.996599
Target:  5'- uUCGUGGc-GCCGCGcuGGgccgcGCUGCAg -3'
miRNA:   3'- -AGCGCCuuUGGCGCuuUCa----UGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 132039 0.66 0.996599
Target:  5'- cCGCGGcGGGCCGCGGccugccggccGcGgcCUGCGCg -3'
miRNA:   3'- aGCGCC-UUUGGCGCU----------UuCauGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 3320 0.66 0.996599
Target:  5'- -aGCGGGuaggcGGCCGCGcaGGGGUGCguuaugccgACGCu -3'
miRNA:   3'- agCGCCU-----UUGGCGC--UUUCAUGa--------UGUG- -5'
6474 5' -49.4 NC_001847.1 + 112273 0.66 0.996599
Target:  5'- cCGCGacGAAGCCGUGcacacggccgcGucGUGCUGCAUc -3'
miRNA:   3'- aGCGC--CUUUGGCGC-----------UuuCAUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 38329 0.66 0.996599
Target:  5'- gCGCGGucGCCGCc-----GCUGCGCg -3'
miRNA:   3'- aGCGCCuuUGGCGcuuucaUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 33545 0.66 0.996542
Target:  5'- aCGCGGAGguugagucgaggcGCaCGCGggGGgcguCUgGCGCg -3'
miRNA:   3'- aGCGCCUU-------------UG-GCGCuuUCau--GA-UGUG- -5'
6474 5' -49.4 NC_001847.1 + 70299 0.66 0.995993
Target:  5'- gUCGCGGcgcGCCGCGcuGGUcucggaGCUgaaGCGCc -3'
miRNA:   3'- -AGCGCCuu-UGGCGCuuUCA------UGA---UGUG- -5'
6474 5' -49.4 NC_001847.1 + 99822 0.66 0.995993
Target:  5'- -gGcCGGggGCCGCuu-AGUGCUuuGCg -3'
miRNA:   3'- agC-GCCuuUGGCGcuuUCAUGAugUG- -5'
6474 5' -49.4 NC_001847.1 + 29366 0.66 0.995993
Target:  5'- -aGCGGcGACCGCGcggcggccGGAGcUGCcGCGCg -3'
miRNA:   3'- agCGCCuUUGGCGC--------UUUC-AUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 133432 0.66 0.995993
Target:  5'- gCGCGGcgGCgGCuGAucGUGCUcgACGCc -3'
miRNA:   3'- aGCGCCuuUGgCG-CUuuCAUGA--UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.