miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 3' -52.7 NC_001847.1 + 36909 0.93 0.047217
Target:  5'- cCAGAACAUCUACGCUG-CGUGCAGAAg -3'
miRNA:   3'- -GUCUUGUAGAUGCGACgGCACGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 123107 0.73 0.637621
Target:  5'- gCAGGGCGUCcaGCGCUccGCCGgGCAGAGg -3'
miRNA:   3'- -GUCUUGUAGa-UGCGA--CGGCaCGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 119673 0.73 0.648383
Target:  5'- gUAGcGCGUCUGCGC-GCCGUGCGc-- -3'
miRNA:   3'- -GUCuUGUAGAUGCGaCGGCACGUcuu -5'
6475 3' -52.7 NC_001847.1 + 42076 0.7 0.811654
Target:  5'- gGGGGC--CUACGC-GUCGUGCAGAAu -3'
miRNA:   3'- gUCUUGuaGAUGCGaCGGCACGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 115785 0.7 0.829687
Target:  5'- cCAGAGCGUUcGCGgaGCCGcUGCGGc- -3'
miRNA:   3'- -GUCUUGUAGaUGCgaCGGC-ACGUCuu -5'
6475 3' -52.7 NC_001847.1 + 116578 0.68 0.898066
Target:  5'- -uGGGCAUCUgcgcucugggcgcaGCGCUGCCGcucUGCGGc- -3'
miRNA:   3'- guCUUGUAGA--------------UGCGACGGC---ACGUCuu -5'
6475 3' -52.7 NC_001847.1 + 24517 0.67 0.919135
Target:  5'- -uGGGCGUCggggcucgcGCGCUGCacgauuucCGUGCAGAGg -3'
miRNA:   3'- guCUUGUAGa--------UGCGACG--------GCACGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 55242 0.67 0.919135
Target:  5'- gCGGAcGCGUCc-CGCUGCugCGUGCGGAc -3'
miRNA:   3'- -GUCU-UGUAGauGCGACG--GCACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 94081 0.67 0.924955
Target:  5'- gCGGGACu----UGCUGcCCGUGCAGAu -3'
miRNA:   3'- -GUCUUGuagauGCGAC-GGCACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 96345 0.67 0.93051
Target:  5'- gCGGGcugGCGUgCgacGCGCUGCCG-GCAGGGa -3'
miRNA:   3'- -GUCU---UGUA-Ga--UGCGACGGCaCGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 14667 0.67 0.93051
Target:  5'- -uGAACAUCgacgGCGCgGCCG-GCGGc- -3'
miRNA:   3'- guCUUGUAGa---UGCGaCGGCaCGUCuu -5'
6475 3' -52.7 NC_001847.1 + 50520 0.67 0.931052
Target:  5'- cCAGGAguUCgcgcuggaccaccugGCGCUGgCGUGCGGGu -3'
miRNA:   3'- -GUCUUguAGa--------------UGCGACgGCACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 128322 0.66 0.940829
Target:  5'- gAGGACGUCaccuuUGCGCUGCac-GCGGAc -3'
miRNA:   3'- gUCUUGUAG-----AUGCGACGgcaCGUCUu -5'
6475 3' -52.7 NC_001847.1 + 108229 0.66 0.940829
Target:  5'- cUAGAccGCuUCUACGcCUGCC-UGCAGGc -3'
miRNA:   3'- -GUCU--UGuAGAUGC-GACGGcACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 29033 0.66 0.940829
Target:  5'- cCAGAGCcgC-GCGC-GCCG-GCAGAc -3'
miRNA:   3'- -GUCUUGuaGaUGCGaCGGCaCGUCUu -5'
6475 3' -52.7 NC_001847.1 + 48199 0.66 0.945595
Target:  5'- uCGGGGCG-CgcgGCGCUGCUGUcgaaguacacGCAGAGc -3'
miRNA:   3'- -GUCUUGUaGa--UGCGACGGCA----------CGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 11335 0.66 0.945595
Target:  5'- cCAGGACGgcgcCUGcCGCUGCCGccgccgcGCAGGc -3'
miRNA:   3'- -GUCUUGUa---GAU-GCGACGGCa------CGUCUu -5'
6475 3' -52.7 NC_001847.1 + 41722 0.66 0.950102
Target:  5'- cCAGGGCGUgUACaGC-GCCGUGCGc-- -3'
miRNA:   3'- -GUCUUGUAgAUG-CGaCGGCACGUcuu -5'
6475 3' -52.7 NC_001847.1 + 975 0.66 0.954352
Target:  5'- -cGGGCGUCUAUGC-GCCGgcccGCAGc- -3'
miRNA:   3'- guCUUGUAGAUGCGaCGGCa---CGUCuu -5'
6475 3' -52.7 NC_001847.1 + 100235 0.66 0.958351
Target:  5'- gCGGGACAUCgaucuuCGCguucucggGCgCGUGCGGGu -3'
miRNA:   3'- -GUCUUGUAGau----GCGa-------CG-GCACGUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.