miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 3' -52.7 NC_001847.1 + 24517 0.67 0.919135
Target:  5'- -uGGGCGUCggggcucgcGCGCUGCacgauuucCGUGCAGAGg -3'
miRNA:   3'- guCUUGUAGa--------UGCGACG--------GCACGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 55242 0.67 0.919135
Target:  5'- gCGGAcGCGUCc-CGCUGCugCGUGCGGAc -3'
miRNA:   3'- -GUCU-UGUAGauGCGACG--GCACGUCUu -5'
6475 3' -52.7 NC_001847.1 + 116578 0.68 0.898066
Target:  5'- -uGGGCAUCUgcgcucugggcgcaGCGCUGCCGcucUGCGGc- -3'
miRNA:   3'- guCUUGUAGA--------------UGCGACGGC---ACGUCuu -5'
6475 3' -52.7 NC_001847.1 + 115785 0.7 0.829687
Target:  5'- cCAGAGCGUUcGCGgaGCCGcUGCGGc- -3'
miRNA:   3'- -GUCUUGUAGaUGCgaCGGC-ACGUCuu -5'
6475 3' -52.7 NC_001847.1 + 42076 0.7 0.811654
Target:  5'- gGGGGC--CUACGC-GUCGUGCAGAAu -3'
miRNA:   3'- gUCUUGuaGAUGCGaCGGCACGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 119673 0.73 0.648383
Target:  5'- gUAGcGCGUCUGCGC-GCCGUGCGc-- -3'
miRNA:   3'- -GUCuUGUAGAUGCGaCGGCACGUcuu -5'
6475 3' -52.7 NC_001847.1 + 123107 0.73 0.637621
Target:  5'- gCAGGGCGUCcaGCGCUccGCCGgGCAGAGg -3'
miRNA:   3'- -GUCUUGUAGa-UGCGA--CGGCaCGUCUU- -5'
6475 3' -52.7 NC_001847.1 + 36909 0.93 0.047217
Target:  5'- cCAGAACAUCUACGCUG-CGUGCAGAAg -3'
miRNA:   3'- -GUCUUGUAGAUGCGACgGCACGUCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.