miRNA display CGI


Results 21 - 40 of 807 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6475 5' -63.4 NC_001847.1 + 132616 0.66 0.565013
Target:  5'- cAGCggucCCGCGGcCCGgcagcaaagCGCGaGGCgGCCc -3'
miRNA:   3'- -UCGa---GGCGCC-GGCa--------GCGUgCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 38713 0.66 0.565013
Target:  5'- uGcCUCCGgGGCCG-CGCcugccgcCGGCcccGCCa -3'
miRNA:   3'- uC-GAGGCgCCGGCaGCGu------GCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 105158 0.66 0.565013
Target:  5'- cGGCUCC-C-GCCG-CGC-CGGCccgGCCg -3'
miRNA:   3'- -UCGAGGcGcCGGCaGCGuGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 134529 0.66 0.565013
Target:  5'- aGGCgcgggCCGCGcGCCGcUGCggaGCGGCcgcggaggGCCa -3'
miRNA:   3'- -UCGa----GGCGC-CGGCaGCG---UGCCGa-------CGG- -5'
6475 5' -63.4 NC_001847.1 + 43216 0.66 0.565013
Target:  5'- uGCUCgGC-GCCGUUGCcCGGUgGCg -3'
miRNA:   3'- uCGAGgCGcCGGCAGCGuGCCGaCGg -5'
6475 5' -63.4 NC_001847.1 + 101572 0.66 0.565013
Target:  5'- cGGCaCCGCgcacGGCCGccUC-CGCGGCgucUGCCg -3'
miRNA:   3'- -UCGaGGCG----CCGGC--AGcGUGCCG---ACGG- -5'
6475 5' -63.4 NC_001847.1 + 11566 0.66 0.565013
Target:  5'- cAGCgggUGCGGCUGcCGCGgugcCGGUUGCUu -3'
miRNA:   3'- -UCGag-GCGCCGGCaGCGU----GCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 2345 0.66 0.565013
Target:  5'- cGGCUCC-C-GCCG-CGC-CGGCccgGCCg -3'
miRNA:   3'- -UCGAGGcGcCGGCaGCGuGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 75855 0.66 0.565013
Target:  5'- aGGuCUCgGCGGUguUG-CGCGCGGCgGCg -3'
miRNA:   3'- -UC-GAGgCGCCG--GCaGCGUGCCGaCGg -5'
6475 5' -63.4 NC_001847.1 + 7233 0.66 0.565013
Target:  5'- cGCUgCaGCGGCUgGUCGggUGGCUGUg -3'
miRNA:   3'- uCGAgG-CGCCGG-CAGCguGCCGACGg -5'
6475 5' -63.4 NC_001847.1 + 134872 0.66 0.565013
Target:  5'- gGGCUCgGCGGCCccCGggcucgggcccCugGGC-GCCg -3'
miRNA:   3'- -UCGAGgCGCCGGcaGC-----------GugCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 15879 0.66 0.565013
Target:  5'- cAGCUCCGacaGcGCCGacgagcUCGCuaucgACGGCcccaUGCCu -3'
miRNA:   3'- -UCGAGGCg--C-CGGC------AGCG-----UGCCG----ACGG- -5'
6475 5' -63.4 NC_001847.1 + 105704 0.66 0.565013
Target:  5'- cGCgCCGCGcGUCGaguacCGCGCGaGCgggGCCa -3'
miRNA:   3'- uCGaGGCGC-CGGCa----GCGUGC-CGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 82730 0.66 0.565013
Target:  5'- gAGCUCgacagCGCGcGCCGcccgCGCugGaGCgcuUGCCg -3'
miRNA:   3'- -UCGAG-----GCGC-CGGCa---GCGugC-CG---ACGG- -5'
6475 5' -63.4 NC_001847.1 + 31716 0.66 0.565013
Target:  5'- aGGCgcgggCCGCGcGCCGcUGCggaGCGGCcgcggaggGCCa -3'
miRNA:   3'- -UCGa----GGCGC-CGGCaGCG---UGCCGa-------CGG- -5'
6475 5' -63.4 NC_001847.1 + 7897 0.66 0.565013
Target:  5'- uAGC-CgCGCGGgg--CGCGCGGCgGCCg -3'
miRNA:   3'- -UCGaG-GCGCCggcaGCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 29555 0.66 0.565013
Target:  5'- gAGUUCCcccGCacggacGCCGU-GC-CGGCUGCCg -3'
miRNA:   3'- -UCGAGG---CGc-----CGGCAgCGuGCCGACGG- -5'
6475 5' -63.4 NC_001847.1 + 6732 0.66 0.565013
Target:  5'- uGGCccUCaacauaGCGGgCGUCGUcuGCGGUgcgGCCg -3'
miRNA:   3'- -UCG--AGg-----CGCCgGCAGCG--UGCCGa--CGG- -5'
6475 5' -63.4 NC_001847.1 + 42018 0.66 0.565013
Target:  5'- aAGCUgCGcCGuGCCG--GCGCGGC-GCCu -3'
miRNA:   3'- -UCGAgGC-GC-CGGCagCGUGCCGaCGG- -5'
6475 5' -63.4 NC_001847.1 + 5894 0.66 0.565013
Target:  5'- gGGCggCCGC-GCCGUCGCAgauUGuGC-GCCc -3'
miRNA:   3'- -UCGa-GGCGcCGGCAGCGU---GC-CGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.