miRNA display CGI


Results 21 - 40 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 3' -57.9 NC_001847.1 + 64170 0.66 0.838984
Target:  5'- gGC-CGCuUGCGCGGAcg-GGGCGgCGGg -3'
miRNA:   3'- -UGcGCG-ACGCGCUUaugCUCGCgGCC- -5'
6476 3' -57.9 NC_001847.1 + 97877 0.66 0.838984
Target:  5'- cGCGUcccagucgGCgGCGCGGAUgGCGAacagcGCGCCGu -3'
miRNA:   3'- -UGCG--------CGaCGCGCUUA-UGCU-----CGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 13003 0.66 0.838984
Target:  5'- cCGCGCgGCGCcc-UGC--GCGCCGGc -3'
miRNA:   3'- uGCGCGaCGCGcuuAUGcuCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 56308 0.66 0.838984
Target:  5'- -gGCGUcGCGCG---GCGGGCGCgCGa -3'
miRNA:   3'- ugCGCGaCGCGCuuaUGCUCGCG-GCc -5'
6476 3' -57.9 NC_001847.1 + 123102 0.66 0.838984
Target:  5'- aGCGCGCaGgGCGuccaGCGcucCGCCGGg -3'
miRNA:   3'- -UGCGCGaCgCGCuua-UGCuc-GCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 112051 0.66 0.838984
Target:  5'- -gGCGC-GCGCGGGcUACGuagagGGCGCCc- -3'
miRNA:   3'- ugCGCGaCGCGCUU-AUGC-----UCGCGGcc -5'
6476 3' -57.9 NC_001847.1 + 120887 0.66 0.838175
Target:  5'- -gGCGCUuggcauucaaGCGUGAuggcuauauaggcAUACGAGgGCgGGg -3'
miRNA:   3'- ugCGCGA----------CGCGCU-------------UAUGCUCgCGgCC- -5'
6476 3' -57.9 NC_001847.1 + 81730 0.66 0.838175
Target:  5'- gACGCcaucauccgGCcGUGCGggUucagccuGCG-GCGCCGGc -3'
miRNA:   3'- -UGCG---------CGaCGCGCuuA-------UGCuCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 79052 0.66 0.838175
Target:  5'- gACGCGCUuaacgcgGCGcCGGAgcCGGGCGCg-- -3'
miRNA:   3'- -UGCGCGA-------CGC-GCUUauGCUCGCGgcc -5'
6476 3' -57.9 NC_001847.1 + 49275 0.66 0.838175
Target:  5'- uCGCGCUgcucgccGCGCGGAgccGCGAcucGCuGCUGGc -3'
miRNA:   3'- uGCGCGA-------CGCGCUUa--UGCU---CG-CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 16358 0.66 0.830814
Target:  5'- -gGCGCUG-GCGGcUGCcGGUGCCGc -3'
miRNA:   3'- ugCGCGACgCGCUuAUGcUCGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 131227 0.66 0.830814
Target:  5'- -aGCGCggGCGCGcaaccgGCGcccGCGCUGGc -3'
miRNA:   3'- ugCGCGa-CGCGCuua---UGCu--CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 18624 0.66 0.830814
Target:  5'- cGCGCGCguaGCGCaggcaGAGgugcucgGCGAGCGCg-- -3'
miRNA:   3'- -UGCGCGa--CGCG-----CUUa------UGCUCGCGgcc -5'
6476 3' -57.9 NC_001847.1 + 15450 0.66 0.830814
Target:  5'- gGCGCuGCUGaaaaGCGug-GCG-GCGCaCGGc -3'
miRNA:   3'- -UGCG-CGACg---CGCuuaUGCuCGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 34489 0.66 0.830814
Target:  5'- gACG-GCgGCGaGGAUGCGAGCgagGCCGa -3'
miRNA:   3'- -UGCgCGaCGCgCUUAUGCUCG---CGGCc -5'
6476 3' -57.9 NC_001847.1 + 133339 0.66 0.830814
Target:  5'- aGCGCGCUcgGCGCGcaggGCGuGCuGCUGc -3'
miRNA:   3'- -UGCGCGA--CGCGCuua-UGCuCG-CGGCc -5'
6476 3' -57.9 NC_001847.1 + 33886 0.66 0.830814
Target:  5'- gGCGcCGCcGCGCGuggccGCGGGCGUgcaGGa -3'
miRNA:   3'- -UGC-GCGaCGCGCuua--UGCUCGCGg--CC- -5'
6476 3' -57.9 NC_001847.1 + 13422 0.66 0.830814
Target:  5'- -aGCGCU-CGCGGA-GCGGggccuGCGCUGGc -3'
miRNA:   3'- ugCGCGAcGCGCUUaUGCU-----CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 105042 0.66 0.830814
Target:  5'- aGCGcCGCgGCGCuGGGcGCGGGCGugugguaguccCCGGg -3'
miRNA:   3'- -UGC-GCGaCGCG-CUUaUGCUCGC-----------GGCC- -5'
6476 3' -57.9 NC_001847.1 + 47889 0.66 0.830814
Target:  5'- nGCGCGCccGCGCGccgggGCGca-GCCGGu -3'
miRNA:   3'- -UGCGCGa-CGCGCuua--UGCucgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.