miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 5' -55.5 NC_001847.1 + 101863 0.66 0.890811
Target:  5'- gAGCAGGUcgcggaggaGCUcGCCUuuGcgcGCGGACc -3'
miRNA:   3'- -UCGUUCA---------CGA-CGGAggCuuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 5237 0.66 0.883788
Target:  5'- uGGCuccGUGCagGUCUCCGcgggGGAGgGGGCg -3'
miRNA:   3'- -UCGuu-CACGa-CGGAGGC----UUUCgCCUG- -5'
6476 5' -55.5 NC_001847.1 + 11430 0.66 0.883788
Target:  5'- gAGCgAAGUGCUGCCgugcgaccCCGcgccAGCGG-Cu -3'
miRNA:   3'- -UCG-UUCACGACGGa-------GGCuu--UCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 29481 0.66 0.883788
Target:  5'- cGGcCGAGgcgGCacGCuCUCCGGccGCGGGCg -3'
miRNA:   3'- -UC-GUUCa--CGa-CG-GAGGCUuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 36955 0.66 0.884501
Target:  5'- gAGCGGGgGCUGCggccagcgcgggcgCCGGcGAGCGGGCc -3'
miRNA:   3'- -UCGUUCaCGACGga------------GGCU-UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 120238 0.66 0.890811
Target:  5'- cGGCGAG-GCagucgGCCUgCGc--GCGGACg -3'
miRNA:   3'- -UCGUUCaCGa----CGGAgGCuuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 43076 0.67 0.836917
Target:  5'- cGCGGGcGCUGCUggcUCGgcGGCGGAg -3'
miRNA:   3'- uCGUUCaCGACGGa--GGCuuUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 133767 0.67 0.845262
Target:  5'- cAGCGcGUGCUGCCggcgCuCGAcGGGCgcaaGGACa -3'
miRNA:   3'- -UCGUuCACGACGGa---G-GCU-UUCG----CCUG- -5'
6476 5' -55.5 NC_001847.1 + 87514 0.67 0.850982
Target:  5'- uGCAcGUGCccGCCgccgCCGAAAgccuggaaguauucGCGGGCa -3'
miRNA:   3'- uCGUuCACGa-CGGa---GGCUUU--------------CGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 53352 0.67 0.853402
Target:  5'- aAGCGAcGcGCUGCUggCGGccGCGGGCa -3'
miRNA:   3'- -UCGUU-CaCGACGGagGCUuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 103794 0.67 0.853402
Target:  5'- cGGCGGG-GCUuccGCCgCCGgcGGCGGcACg -3'
miRNA:   3'- -UCGUUCaCGA---CGGaGGCuuUCGCC-UG- -5'
6476 5' -55.5 NC_001847.1 + 131656 0.67 0.836917
Target:  5'- cGGCGcc-GCUGCCgCCGGucGgGGACg -3'
miRNA:   3'- -UCGUucaCGACGGaGGCUuuCgCCUG- -5'
6476 5' -55.5 NC_001847.1 + 115691 0.67 0.828377
Target:  5'- cGGCgGAGcgGCUGgC-CCGgcAGCGGGCg -3'
miRNA:   3'- -UCG-UUCa-CGACgGaGGCuuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 74986 0.67 0.828377
Target:  5'- gGGCGGG-GCgccagGCUcagUCCGccGGCGGGCg -3'
miRNA:   3'- -UCGUUCaCGa----CGG---AGGCuuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 48898 0.67 0.819649
Target:  5'- gGGCGAGUGCccuguucgcaGUCUCUGuccauagccuGGCGGGCg -3'
miRNA:   3'- -UCGUUCACGa---------CGGAGGCuu--------UCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 39182 0.67 0.845262
Target:  5'- uGuCGAG-GCUcagGCC-CUGGGAGCGGGCg -3'
miRNA:   3'- uC-GUUCaCGA---CGGaGGCUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 14910 0.67 0.852597
Target:  5'- cGCAGGccGaCUGCCUCgccgCGAuacacaaggcugcGAGCGGGCg -3'
miRNA:   3'- uCGUUCa-C-GACGGAG----GCU-------------UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 38123 0.67 0.853402
Target:  5'- cGGCGGGUGC-GCCgggcaCCGAGucuucGCGcGGCg -3'
miRNA:   3'- -UCGUUCACGaCGGa----GGCUUu----CGC-CUG- -5'
6476 5' -55.5 NC_001847.1 + 129668 0.67 0.853402
Target:  5'- cGGCGGccGCUGCCgccgCCGcagAGAGCGGcCg -3'
miRNA:   3'- -UCGUUcaCGACGGa---GGC---UUUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 52043 0.67 0.828377
Target:  5'- cGCGAG-GCggagGCCcgcCCGGAggugugGGCGGGCa -3'
miRNA:   3'- uCGUUCaCGa---CGGa--GGCUU------UCGCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.