miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 5' -55.5 NC_001847.1 + 131933 0.66 0.869043
Target:  5'- cGCGAGcgGCUGCg--CGAGcuGGCGGACc -3'
miRNA:   3'- uCGUUCa-CGACGgagGCUU--UCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 10241 0.66 0.861331
Target:  5'- aAGcCGAGUugcGUUGUCUuuGGgauGAGCGGGCg -3'
miRNA:   3'- -UC-GUUCA---CGACGGAggCU---UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 83931 0.66 0.861331
Target:  5'- gAGCAgggcccgcucgaAGUGC-GCgCggggCCGggGGCGGAg -3'
miRNA:   3'- -UCGU------------UCACGaCG-Ga---GGCuuUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 48111 0.66 0.861331
Target:  5'- gAGgAGGuUGgUGaCCUCCGAGAaagucGCGGGCc -3'
miRNA:   3'- -UCgUUC-ACgAC-GGAGGCUUU-----CGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 116594 0.66 0.861331
Target:  5'- gGGCGcAGcGCUGCCgcUCUGcgGcGCGGACg -3'
miRNA:   3'- -UCGU-UCaCGACGG--AGGCuuU-CGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 53864 0.66 0.860548
Target:  5'- cAGgGGGUGCUGUggggcggccgucuCUCCGGAaagcAGCGG-Ca -3'
miRNA:   3'- -UCgUUCACGACG-------------GAGGCUU----UCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 129668 0.67 0.853402
Target:  5'- cGGCGGccGCUGCCgccgCCGcagAGAGCGGcCg -3'
miRNA:   3'- -UCGUUcaCGACGGa---GGC---UUUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 38123 0.67 0.853402
Target:  5'- cGGCGGGUGC-GCCgggcaCCGAGucuucGCGcGGCg -3'
miRNA:   3'- -UCGUUCACGaCGGa----GGCUUu----CGC-CUG- -5'
6476 5' -55.5 NC_001847.1 + 53352 0.67 0.853402
Target:  5'- aAGCGAcGcGCUGCUggCGGccGCGGGCa -3'
miRNA:   3'- -UCGUU-CaCGACGGagGCUuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 103794 0.67 0.853402
Target:  5'- cGGCGGG-GCUuccGCCgCCGgcGGCGGcACg -3'
miRNA:   3'- -UCGUUCaCGA---CGGaGGCuuUCGCC-UG- -5'
6476 5' -55.5 NC_001847.1 + 14910 0.67 0.852597
Target:  5'- cGCAGGccGaCUGCCUCgccgCGAuacacaaggcugcGAGCGGGCg -3'
miRNA:   3'- uCGUUCa-C-GACGGAG----GCU-------------UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 87514 0.67 0.850982
Target:  5'- uGCAcGUGCccGCCgccgCCGAAAgccuggaaguauucGCGGGCa -3'
miRNA:   3'- uCGUuCACGa-CGGa---GGCUUU--------------CGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 3949 0.67 0.845262
Target:  5'- cGGCGGGggggGCgccGUCUCCGgcGGCgaGGGCg -3'
miRNA:   3'- -UCGUUCa---CGa--CGGAGGCuuUCG--CCUG- -5'
6476 5' -55.5 NC_001847.1 + 30954 0.67 0.845262
Target:  5'- cAGCGcGUGCUGCCggcgCuCGAcGGGCgcaaGGACa -3'
miRNA:   3'- -UCGUuCACGACGGa---G-GCU-UUCG----CCUG- -5'
6476 5' -55.5 NC_001847.1 + 39182 0.67 0.845262
Target:  5'- uGuCGAG-GCUcagGCC-CUGGGAGCGGGCg -3'
miRNA:   3'- uC-GUUCaCGA---CGGaGGCUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 133767 0.67 0.845262
Target:  5'- cAGCGcGUGCUGCCggcgCuCGAcGGGCgcaaGGACa -3'
miRNA:   3'- -UCGUuCACGACGGa---G-GCU-UUCG----CCUG- -5'
6476 5' -55.5 NC_001847.1 + 43076 0.67 0.836917
Target:  5'- cGCGGGcGCUGCUggcUCGgcGGCGGAg -3'
miRNA:   3'- uCGUUCaCGACGGa--GGCuuUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 131656 0.67 0.836917
Target:  5'- cGGCGcc-GCUGCCgCCGGucGgGGACg -3'
miRNA:   3'- -UCGUucaCGACGGaGGCUuuCgCCUG- -5'
6476 5' -55.5 NC_001847.1 + 108635 0.67 0.836917
Target:  5'- cGGCGGGcgacGCUGCagaaguggCCGggGccGCGGACg -3'
miRNA:   3'- -UCGUUCa---CGACGga------GGCuuU--CGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 126041 0.67 0.836917
Target:  5'- gGGCcuGcGgUGgCUCCGAGAGCGGcACc -3'
miRNA:   3'- -UCGuuCaCgACgGAGGCUUUCGCC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.