miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 3' -60.5 NC_001847.1 + 88172 0.66 0.712097
Target:  5'- aGCCuGCGCCUCccaaAGUGGggccggcuccuugGCUUCgCCGCa -3'
miRNA:   3'- -CGGcCGCGGGG----UUACC-------------UGAAG-GGCGc -5'
6477 3' -60.5 NC_001847.1 + 132494 0.66 0.712097
Target:  5'- cGCCgggcgaaGGCGCCgCAAgcgGcGACggcggUCCCGCc -3'
miRNA:   3'- -CGG-------CCGCGGgGUUa--C-CUGa----AGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 12224 0.66 0.709186
Target:  5'- uGCgCGGCGCgcgcacaCCCGAacggcgaGGGCUgcgaugcccaccagUCCCGCGa -3'
miRNA:   3'- -CG-GCCGCG-------GGGUUa------CCUGA--------------AGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 43552 0.66 0.703346
Target:  5'- -aCGGCGCCgCGGUuugcGcGCUUCgCCGCGg -3'
miRNA:   3'- cgGCCGCGGgGUUA----CcUGAAG-GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 98599 0.66 0.703346
Target:  5'- cGCCGGCGCU----UGGGCggcgcggcacCCCGCa -3'
miRNA:   3'- -CGGCCGCGGgguuACCUGaa--------GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 112563 0.66 0.703346
Target:  5'- gGCgGGCccuGCCCCg--GGGCg-CCCGCu -3'
miRNA:   3'- -CGgCCG---CGGGGuuaCCUGaaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 9750 0.66 0.703346
Target:  5'- gGCgGGCccuGCCCCg--GGGCg-CCCGCu -3'
miRNA:   3'- -CGgCCG---CGGGGuuaCCUGaaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 14068 0.66 0.703346
Target:  5'- gGCCGGUGCUugggCCGcucGUGGACa--UCGCGg -3'
miRNA:   3'- -CGGCCGCGG----GGU---UACCUGaagGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 60141 0.66 0.703346
Target:  5'- cGUCGGCGCCgaagaaCGcgGGguGCgccacgCCCGCGa -3'
miRNA:   3'- -CGGCCGCGGg-----GUuaCC--UGaa----GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 51279 0.66 0.703346
Target:  5'- cGCCgcGGCGCgCUCGG-GGAaguggCCCGCGa -3'
miRNA:   3'- -CGG--CCGCG-GGGUUaCCUgaa--GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 114686 0.66 0.703346
Target:  5'- aGCCGccGCGgCCUGcUGGACgccUUCCGCGc -3'
miRNA:   3'- -CGGC--CGCgGGGUuACCUGa--AGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 83470 0.66 0.703346
Target:  5'- cGUCGG-GCuCCCGGgcGGCUUCCCGUu -3'
miRNA:   3'- -CGGCCgCG-GGGUUacCUGAAGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 120714 0.66 0.703346
Target:  5'- cGCuCGGCGCCaaaCAGcGGAgc-CCCGCa -3'
miRNA:   3'- -CG-GCCGCGGg--GUUaCCUgaaGGGCGc -5'
6477 3' -60.5 NC_001847.1 + 22115 0.66 0.703346
Target:  5'- uGCCGGCGUCCCA---GACg---CGCGg -3'
miRNA:   3'- -CGGCCGCGGGGUuacCUGaaggGCGC- -5'
6477 3' -60.5 NC_001847.1 + 33025 0.66 0.702371
Target:  5'- uGCCGcCGCCCUcuccgccGAgcUGGACgcgCUCGCGg -3'
miRNA:   3'- -CGGCcGCGGGG-------UU--ACCUGaa-GGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 85132 0.66 0.69357
Target:  5'- cCCGGgGCCCagcaggCGGUGGGCgcgcgggcuccUCUCGCGg -3'
miRNA:   3'- cGGCCgCGGG------GUUACCUGa----------AGGGCGC- -5'
6477 3' -60.5 NC_001847.1 + 29815 0.66 0.69357
Target:  5'- cCCGGCGCCCaCGAc-GACgcaggUCCGCa -3'
miRNA:   3'- cGGCCGCGGG-GUUacCUGaa---GGGCGc -5'
6477 3' -60.5 NC_001847.1 + 12922 0.66 0.69357
Target:  5'- cGUgGGCGCCCCugaGGGCa-CCCGg- -3'
miRNA:   3'- -CGgCCGCGGGGuuaCCUGaaGGGCgc -5'
6477 3' -60.5 NC_001847.1 + 134012 0.66 0.69357
Target:  5'- cGCCgaGGCGCCgCCGcUGGuGCUggaggCCGCGg -3'
miRNA:   3'- -CGG--CCGCGG-GGUuACC-UGAag---GGCGC- -5'
6477 3' -60.5 NC_001847.1 + 131821 0.66 0.69357
Target:  5'- gGCCGGCGCCggcggCAGcGGcg--CCCGCGc -3'
miRNA:   3'- -CGGCCGCGGg----GUUaCCugaaGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.