miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6477 5' -53.5 NC_001847.1 + 50529 0.66 0.924809
Target:  5'- cGCGCUGGAccaccuGGcGCUGGCGUGCgGg-- -3'
miRNA:   3'- uCGCGAUCU------UC-UGGUCGCACGgUaau -5'
6477 5' -53.5 NC_001847.1 + 82459 0.66 0.919009
Target:  5'- cGCGCacGGccgcGugCGGCGUGCCGUg- -3'
miRNA:   3'- uCGCGa-UCuu--CugGUCGCACGGUAau -5'
6477 5' -53.5 NC_001847.1 + 52057 0.67 0.912946
Target:  5'- cGCGCccGAAGGCCguGGC-UGCCGUg- -3'
miRNA:   3'- uCGCGauCUUCUGG--UCGcACGGUAau -5'
6477 5' -53.5 NC_001847.1 + 47997 0.67 0.912946
Target:  5'- cGCGCU----GGCCAGCGUGCa---- -3'
miRNA:   3'- uCGCGAucuuCUGGUCGCACGguaau -5'
6477 5' -53.5 NC_001847.1 + 132462 0.67 0.912946
Target:  5'- gGGCGC-GGAGGACgAGCcGaUGCCGg-- -3'
miRNA:   3'- -UCGCGaUCUUCUGgUCG-C-ACGGUaau -5'
6477 5' -53.5 NC_001847.1 + 37392 0.67 0.912946
Target:  5'- uGCGCUGacaacGAUCAGCGUGCUg--- -3'
miRNA:   3'- uCGCGAUcuu--CUGGUCGCACGGuaau -5'
6477 5' -53.5 NC_001847.1 + 60010 0.67 0.912946
Target:  5'- cAGCGCgacguGGGCaaagAGCGUGCCGUc- -3'
miRNA:   3'- -UCGCGaucu-UCUGg---UCGCACGGUAau -5'
6477 5' -53.5 NC_001847.1 + 88640 0.67 0.906624
Target:  5'- uGCGCgAGAGccuGCuCAGCGUGCUGUUGc -3'
miRNA:   3'- uCGCGaUCUUc--UG-GUCGCACGGUAAU- -5'
6477 5' -53.5 NC_001847.1 + 31216 0.67 0.906624
Target:  5'- uGGUGCUGGAGGcCgCGGCGgcGCCGc-- -3'
miRNA:   3'- -UCGCGAUCUUCuG-GUCGCa-CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 69567 0.67 0.906624
Target:  5'- uGUGcCUGGggGGCCAcGUG-GCCGUg- -3'
miRNA:   3'- uCGC-GAUCuuCUGGU-CGCaCGGUAau -5'
6477 5' -53.5 NC_001847.1 + 134029 0.67 0.906624
Target:  5'- uGGUGCUGGAGGcCgCGGCGgcGCCGc-- -3'
miRNA:   3'- -UCGCGAUCUUCuG-GUCGCa-CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 124437 0.67 0.906624
Target:  5'- cGGCGCUu---GGCCGGCGcggGCCGc-- -3'
miRNA:   3'- -UCGCGAucuuCUGGUCGCa--CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 21624 0.67 0.906624
Target:  5'- cGGCGCUu---GGCCGGCGcggGCCGc-- -3'
miRNA:   3'- -UCGCGAucuuCUGGUCGCa--CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 50553 0.67 0.906624
Target:  5'- cGGCGCUGcuGGACCgcGGCGUcGCCu--- -3'
miRNA:   3'- -UCGCGAUcuUCUGG--UCGCA-CGGuaau -5'
6477 5' -53.5 NC_001847.1 + 56804 0.67 0.906624
Target:  5'- cGCGCUcacGGGGCCGGCGcGCCu--- -3'
miRNA:   3'- uCGCGAuc-UUCUGGUCGCaCGGuaau -5'
6477 5' -53.5 NC_001847.1 + 64831 0.67 0.906624
Target:  5'- gGGCGCUucAGcuccGAGACCAGCGcggcgcGCCGc-- -3'
miRNA:   3'- -UCGCGA--UC----UUCUGGUCGCa-----CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 86898 0.67 0.906624
Target:  5'- uGCGCgacGAGGGCCAGCugaucgacGCCAUg- -3'
miRNA:   3'- uCGCGau-CUUCUGGUCGca------CGGUAau -5'
6477 5' -53.5 NC_001847.1 + 53838 0.67 0.906624
Target:  5'- gGGCGCU-GAAGAgCCGGCGcggggGUCAg-- -3'
miRNA:   3'- -UCGCGAuCUUCU-GGUCGCa----CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 80648 0.67 0.906624
Target:  5'- cGGCGCUcgcGGGAGACCcGGCGccggggaGCCGa-- -3'
miRNA:   3'- -UCGCGA---UCUUCUGG-UCGCa------CGGUaau -5'
6477 5' -53.5 NC_001847.1 + 43784 0.67 0.900044
Target:  5'- cGGUGCUGGAcGcgcgcGCCGGCGcGCCGg-- -3'
miRNA:   3'- -UCGCGAUCUuC-----UGGUCGCaCGGUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.