miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 3' -55.9 NC_001847.1 + 8302 0.66 0.865266
Target:  5'- -----gGCUCCCcgggGgGCCaGGCUGuCGGCa -3'
miRNA:   3'- uuuauaUGAGGG----CgCGG-CCGAC-GCUG- -5'
6478 3' -55.9 NC_001847.1 + 27687 0.66 0.865266
Target:  5'- -----aGCUgCCUuuauaGCGCCGGCgcacGCGGCg -3'
miRNA:   3'- uuuauaUGA-GGG-----CGCGGCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 132258 0.66 0.865266
Target:  5'- ---gGUACUCgaCGCG-CGGCgcgGCGGCc -3'
miRNA:   3'- uuuaUAUGAGg-GCGCgGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 884 0.66 0.865266
Target:  5'- -----gGCggCCCGCGCCGGggccgccGCGGCc -3'
miRNA:   3'- uuuauaUGa-GGGCGCGGCCga-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 24037 0.66 0.865266
Target:  5'- --uUGUACagCCCGUGCCG-C-GCGACc -3'
miRNA:   3'- uuuAUAUGa-GGGCGCGGCcGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 29445 0.66 0.865266
Target:  5'- ---gGUACUCgaCGCG-CGGCgcgGCGGCc -3'
miRNA:   3'- uuuaUAUGAGg-GCGCgGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 100881 0.66 0.865266
Target:  5'- -----aGCcgCCgCGCGCCGGuCUGCGcCu -3'
miRNA:   3'- uuuauaUGa-GG-GCGCGGCC-GACGCuG- -5'
6478 3' -55.9 NC_001847.1 + 33599 0.66 0.865266
Target:  5'- -----gACgUCCUGCGCCaGCUG-GACg -3'
miRNA:   3'- uuuauaUG-AGGGCGCGGcCGACgCUG- -5'
6478 3' -55.9 NC_001847.1 + 81457 0.66 0.865266
Target:  5'- -----cGCUCgCGCGCgcacaucuugCGGCUgGCGGCa -3'
miRNA:   3'- uuuauaUGAGgGCGCG----------GCCGA-CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 2377 0.66 0.865266
Target:  5'- -----cGCgcgCCCGCGaagaCGGCgGUGACg -3'
miRNA:   3'- uuuauaUGa--GGGCGCg---GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 103697 0.66 0.865266
Target:  5'- -----gGCggCCCGCGCCGGggccgccGCGGCc -3'
miRNA:   3'- uuuauaUGa-GGGCGCGGCCga-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 130269 0.66 0.865266
Target:  5'- aAAAUGgGCUUCCGCG-UGGCUGUGcCc -3'
miRNA:   3'- -UUUAUaUGAGGGCGCgGCCGACGCuG- -5'
6478 3' -55.9 NC_001847.1 + 94157 0.66 0.865266
Target:  5'- -----gACaUCUCGCGgCGGCUGCugGGCg -3'
miRNA:   3'- uuuauaUG-AGGGCGCgGCCGACG--CUG- -5'
6478 3' -55.9 NC_001847.1 + 36479 0.66 0.865266
Target:  5'- ----cUGCaCCUGCGCgGGCgcgugGCGGCc -3'
miRNA:   3'- uuuauAUGaGGGCGCGgCCGa----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 53948 0.66 0.865266
Target:  5'- ----cUACgCgCGCGCCGGCUGgCGcCg -3'
miRNA:   3'- uuuauAUGaGgGCGCGGCCGAC-GCuG- -5'
6478 3' -55.9 NC_001847.1 + 51021 0.66 0.857463
Target:  5'- -----aGCUUUCGCGgcgcuCUGGCUGCGAUc -3'
miRNA:   3'- uuuauaUGAGGGCGC-----GGCCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 43429 0.66 0.857463
Target:  5'- ----cUGCUgCUGCugGCCGGCgucGCGACc -3'
miRNA:   3'- uuuauAUGAgGGCG--CGGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 132795 0.66 0.857463
Target:  5'- -----cGCggCCGgGCCGGC-GCGGCg -3'
miRNA:   3'- uuuauaUGagGGCgCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 72031 0.66 0.857463
Target:  5'- --------aCCCGUGCgCGGCgGCGGCc -3'
miRNA:   3'- uuuauaugaGGGCGCG-GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 3223 0.66 0.857463
Target:  5'- ---cGUGCcUCCGCGCCG-CcGCGGCu -3'
miRNA:   3'- uuuaUAUGaGGGCGCGGCcGaCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.