miRNA display CGI


Results 21 - 40 of 636 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 5' -62.6 NC_001847.1 + 111279 0.66 0.606912
Target:  5'- ---cGGCGCCGGgcCGGggGCG-GCGCUc -3'
miRNA:   3'- cguaCCGUGGCC--GCCagCGCgCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 61277 0.66 0.606912
Target:  5'- cGCGcgGGCGCCGcGCcGcCGCcuaGCGCGCc -3'
miRNA:   3'- -CGUa-CCGUGGC-CGcCaGCG---CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 4071 0.66 0.606912
Target:  5'- ---cGGUACCgaGGCGGUUGCuGC-CGCa -3'
miRNA:   3'- cguaCCGUGG--CCGCCAGCG-CGcGCGa -5'
6478 5' -62.6 NC_001847.1 + 69878 0.66 0.606912
Target:  5'- aGCucgGGCucUCGGUGG-CGUGCGUGUg -3'
miRNA:   3'- -CGua-CCGu-GGCCGCCaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 75825 0.66 0.606912
Target:  5'- gGUAcGGCGCCGcCGG-CGC-CGCGCc -3'
miRNA:   3'- -CGUaCCGUGGCcGCCaGCGcGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 89925 0.66 0.606912
Target:  5'- cGCGaGGCcgcgcuCgCGGCGG-CGCuCGCGCUg -3'
miRNA:   3'- -CGUaCCGu-----G-GCCGCCaGCGcGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 59516 0.66 0.606912
Target:  5'- gGCc--GCACCGGCuuGGU-GCGCuGCGCUc -3'
miRNA:   3'- -CGuacCGUGGCCG--CCAgCGCG-CGCGA- -5'
6478 5' -62.6 NC_001847.1 + 92871 0.66 0.606912
Target:  5'- aCGUGGCGCCGcGCGaGcUCGagGUGCuGCUg -3'
miRNA:   3'- cGUACCGUGGC-CGC-C-AGCg-CGCG-CGA- -5'
6478 5' -62.6 NC_001847.1 + 33967 0.66 0.606912
Target:  5'- ---aGcGCGCUGGCGc-CGgGCGCGCUg -3'
miRNA:   3'- cguaC-CGUGGCCGCcaGCgCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 107125 0.66 0.606912
Target:  5'- uGCA-GGCGCuCGuaagcGCGGcaCGcCGCGCGCUg -3'
miRNA:   3'- -CGUaCCGUG-GC-----CGCCa-GC-GCGCGCGA- -5'
6478 5' -62.6 NC_001847.1 + 78700 0.66 0.606912
Target:  5'- uGCcgGGCagcacgcgaguGCgGGCGGUCuucCGCGaCGCg -3'
miRNA:   3'- -CGuaCCG-----------UGgCCGCCAGc--GCGC-GCGa -5'
6478 5' -62.6 NC_001847.1 + 102575 0.66 0.601008
Target:  5'- cGCAgcuUGGCGuCCGccaGGUCGCccagcgccgagggcuGCGCGCg -3'
miRNA:   3'- -CGU---ACCGU-GGCcg-CCAGCG---------------CGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 95697 0.66 0.597076
Target:  5'- cGCucUGGCGCggggGGCGG-CGCGgGcCGCUc -3'
miRNA:   3'- -CGu-ACCGUGg---CCGCCaGCGCgC-GCGA- -5'
6478 5' -62.6 NC_001847.1 + 37688 0.66 0.597076
Target:  5'- cGCGgcccUGGCGCgGcuGCGG-CGCGCG-GCUg -3'
miRNA:   3'- -CGU----ACCGUGgC--CGCCaGCGCGCgCGA- -5'
6478 5' -62.6 NC_001847.1 + 83583 0.66 0.597076
Target:  5'- ---aGGCGCCcGCGaGcccgagcacgCGCGCGCGCg -3'
miRNA:   3'- cguaCCGUGGcCGC-Ca---------GCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 123838 0.66 0.597076
Target:  5'- ---cGGCcUCGGCGGgCGCGCccaucuucGCGCg -3'
miRNA:   3'- cguaCCGuGGCCGCCaGCGCG--------CGCGa -5'
6478 5' -62.6 NC_001847.1 + 95643 0.66 0.597076
Target:  5'- cGCucUGGCGCggggGGCGG-CGCGgGcCGCUc -3'
miRNA:   3'- -CGu-ACCGUGg---CCGCCaGCGCgC-GCGA- -5'
6478 5' -62.6 NC_001847.1 + 74827 0.66 0.597076
Target:  5'- ----cGCGCgagcaGGUGG-CGCGCGCGCg -3'
miRNA:   3'- cguacCGUGg----CCGCCaGCGCGCGCGa -5'
6478 5' -62.6 NC_001847.1 + 51061 0.66 0.597076
Target:  5'- aGCA-GGcCACCgaGGCGuUCGUGCGCGg- -3'
miRNA:   3'- -CGUaCC-GUGG--CCGCcAGCGCGCGCga -5'
6478 5' -62.6 NC_001847.1 + 67631 0.66 0.597076
Target:  5'- ---cGGCGCCGGCGGagacggCG-GCG-GCUa -3'
miRNA:   3'- cguaCCGUGGCCGCCa-----GCgCGCgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.