miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 3426 0.66 0.762848
Target:  5'- gGGGGCgccaGGCGCA-GC-CCAGGg--- -3'
miRNA:   3'- -CCCCGag--CCGCGUuUGaGGUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 73190 0.66 0.791046
Target:  5'- cGGGCaCGGCGC--GCgggCAGGCUGc -3'
miRNA:   3'- cCCCGaGCCGCGuuUGag-GUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 24524 0.66 0.772378
Target:  5'- cGGGGCUCGcGCGCugcacgauUUCCgugcagAGGUUGGa -3'
miRNA:   3'- -CCCCGAGC-CGCGuuu-----GAGG------UCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 87988 0.66 0.780846
Target:  5'- cGGGGCcCGGCugcagaagagcacGCAAACcuucCCGGGCc-- -3'
miRNA:   3'- -CCCCGaGCCG-------------CGUUUGa---GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 66338 0.66 0.762848
Target:  5'- cGGGUggGGCGCGGGCgccgCCGuGGCg-- -3'
miRNA:   3'- cCCCGagCCGCGUUUGa---GGU-CCGauu -5'
6479 3' -57.8 NC_001847.1 + 108978 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 15647 0.66 0.7532
Target:  5'- cGGGCUCgGGCuCGGGCU-CGGGCUc- -3'
miRNA:   3'- cCCCGAG-CCGcGUUUGAgGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 43243 0.66 0.772378
Target:  5'- gGGGGCgcgcgggCGGCGCGGcGC-CCGGGg--- -3'
miRNA:   3'- -CCCCGa------GCCGCGUU-UGaGGUCCgauu -5'
6479 3' -57.8 NC_001847.1 + 105049 0.66 0.770482
Target:  5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3'
miRNA:   3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 129300 0.66 0.772378
Target:  5'- aGGGGCgggccUGGUGCAAgGCgggccugCCGGGCg-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUU-UGa------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 39626 0.66 0.800165
Target:  5'- aGGGGCaagccUGGCGCGcccgCCAGGCc-- -3'
miRNA:   3'- -CCCCGa----GCCGCGUuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 69142 0.66 0.800165
Target:  5'- -uGGCgCGGCGUccgcCUUCGGGCUGAa -3'
miRNA:   3'- ccCCGaGCCGCGuuu-GAGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 20656 0.66 0.781781
Target:  5'- aGGGGCUCagcagGGCGgAGACguccgCCAG-CUGg -3'
miRNA:   3'- -CCCCGAG-----CCGCgUUUGa----GGUCcGAUu -5'
6479 3' -57.8 NC_001847.1 + 56797 0.66 0.762848
Target:  5'- aGGGGCUguucgccgccgCGGCGCccaagCCGGGCc-- -3'
miRNA:   3'- -CCCCGA-----------GCCGCGuuugaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 55678 0.66 0.791046
Target:  5'- -cGGCUC-GCGCAGGCggCCGGGgaAAa -3'
miRNA:   3'- ccCCGAGcCGCGUUUGa-GGUCCgaUU- -5'
6479 3' -57.8 NC_001847.1 + 15020 0.66 0.781781
Target:  5'- uGGGGC-C-GCGCGAGCcgcggccgCCGGGCg-- -3'
miRNA:   3'- -CCCCGaGcCGCGUUUGa-------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 104336 0.66 0.762848
Target:  5'- aGGcGGcCUCGGCGCGcGCgaaggcgcCCGGGCc-- -3'
miRNA:   3'- -CC-CC-GAGCCGCGUuUGa-------GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 36210 0.66 0.791046
Target:  5'- aGGGGCU--GCGCGccCUCCuGGCg-- -3'
miRNA:   3'- -CCCCGAgcCGCGUuuGAGGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 130462 0.66 0.794712
Target:  5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3'
miRNA:   3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 108884 0.66 0.772378
Target:  5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3'
miRNA:   3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.