Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 3426 | 0.66 | 0.762848 |
Target: 5'- gGGGGCgccaGGCGCA-GC-CCAGGg--- -3' miRNA: 3'- -CCCCGag--CCGCGUuUGaGGUCCgauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 73190 | 0.66 | 0.791046 |
Target: 5'- cGGGCaCGGCGC--GCgggCAGGCUGc -3' miRNA: 3'- cCCCGaGCCGCGuuUGag-GUCCGAUu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 24524 | 0.66 | 0.772378 |
Target: 5'- cGGGGCUCGcGCGCugcacgauUUCCgugcagAGGUUGGa -3' miRNA: 3'- -CCCCGAGC-CGCGuuu-----GAGG------UCCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 87988 | 0.66 | 0.780846 |
Target: 5'- cGGGGCcCGGCugcagaagagcacGCAAACcuucCCGGGCc-- -3' miRNA: 3'- -CCCCGaGCCG-------------CGUUUGa---GGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 66338 | 0.66 | 0.762848 |
Target: 5'- cGGGUggGGCGCGGGCgccgCCGuGGCg-- -3' miRNA: 3'- cCCCGagCCGCGUUUGa---GGU-CCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 108978 | 0.66 | 0.772378 |
Target: 5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3' miRNA: 3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 15647 | 0.66 | 0.7532 |
Target: 5'- cGGGCUCgGGCuCGGGCU-CGGGCUc- -3' miRNA: 3'- cCCCGAG-CCGcGUUUGAgGUCCGAuu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 43243 | 0.66 | 0.772378 |
Target: 5'- gGGGGCgcgcgggCGGCGCGGcGC-CCGGGg--- -3' miRNA: 3'- -CCCCGa------GCCGCGUU-UGaGGUCCgauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 105049 | 0.66 | 0.770482 |
Target: 5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3' miRNA: 3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 129300 | 0.66 | 0.772378 |
Target: 5'- aGGGGCgggccUGGUGCAAgGCgggccugCCGGGCg-- -3' miRNA: 3'- -CCCCGa----GCCGCGUU-UGa------GGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 39626 | 0.66 | 0.800165 |
Target: 5'- aGGGGCaagccUGGCGCGcccgCCAGGCc-- -3' miRNA: 3'- -CCCCGa----GCCGCGUuugaGGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 69142 | 0.66 | 0.800165 |
Target: 5'- -uGGCgCGGCGUccgcCUUCGGGCUGAa -3' miRNA: 3'- ccCCGaGCCGCGuuu-GAGGUCCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 20656 | 0.66 | 0.781781 |
Target: 5'- aGGGGCUCagcagGGCGgAGACguccgCCAG-CUGg -3' miRNA: 3'- -CCCCGAG-----CCGCgUUUGa----GGUCcGAUu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 56797 | 0.66 | 0.762848 |
Target: 5'- aGGGGCUguucgccgccgCGGCGCccaagCCGGGCc-- -3' miRNA: 3'- -CCCCGA-----------GCCGCGuuugaGGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 55678 | 0.66 | 0.791046 |
Target: 5'- -cGGCUC-GCGCAGGCggCCGGGgaAAa -3' miRNA: 3'- ccCCGAGcCGCGUUUGa-GGUCCgaUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 15020 | 0.66 | 0.781781 |
Target: 5'- uGGGGC-C-GCGCGAGCcgcggccgCCGGGCg-- -3' miRNA: 3'- -CCCCGaGcCGCGUUUGa-------GGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 104336 | 0.66 | 0.762848 |
Target: 5'- aGGcGGcCUCGGCGCGcGCgaaggcgcCCGGGCc-- -3' miRNA: 3'- -CC-CC-GAGCCGCGUuUGa-------GGUCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 36210 | 0.66 | 0.791046 |
Target: 5'- aGGGGCU--GCGCGccCUCCuGGCg-- -3' miRNA: 3'- -CCCCGAgcCGCGUuuGAGGuCCGauu -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 130462 | 0.66 | 0.794712 |
Target: 5'- gGGGGCUCGGaggaagacccggcccUGCucGACgcggcgcgUCGGGCUGAg -3' miRNA: 3'- -CCCCGAGCC---------------GCGu-UUGa-------GGUCCGAUU- -5' |
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6479 | 3' | -57.8 | NC_001847.1 | + | 108884 | 0.66 | 0.772378 |
Target: 5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3' miRNA: 3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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