miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 3' -57.8 NC_001847.1 + 35635 1.08 0.001646
Target:  5'- cGGGGCUCGGCGCAAACUCCAGGCUAAu -3'
miRNA:   3'- -CCCCGAGCCGCGUUUGAGGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 100967 0.83 0.087548
Target:  5'- cGGGGCUCGGCGcCGAGCUCCGaGCg-- -3'
miRNA:   3'- -CCCCGAGCCGC-GUUUGAGGUcCGauu -5'
6479 3' -57.8 NC_001847.1 + 82078 0.76 0.263541
Target:  5'- cGGGCUCGGCGUcugggccAAGCgcggggCCAGGCUc- -3'
miRNA:   3'- cCCCGAGCCGCG-------UUUGa-----GGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 73236 0.75 0.27711
Target:  5'- gGGGGCggCGGCGCGGgcgcGCUCgAGGCc-- -3'
miRNA:   3'- -CCCCGa-GCCGCGUU----UGAGgUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 83460 0.75 0.290546
Target:  5'- gGGGGUUgGGCGuCGGGCUCCcGGGCg-- -3'
miRNA:   3'- -CCCCGAgCCGC-GUUUGAGG-UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 103490 0.75 0.304487
Target:  5'- cGGGGC---GCGCGGGCUCCGGGCc-- -3'
miRNA:   3'- -CCCCGagcCGCGUUUGAGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 81224 0.74 0.341563
Target:  5'- -aGGCUCGGCgGCAGcggcgGCgggCCAGGCUGGg -3'
miRNA:   3'- ccCCGAGCCG-CGUU-----UGa--GGUCCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 68472 0.74 0.341563
Target:  5'- cGGGGCcccgccgcgCgGGCGCAAGCgcgCCAGGCa-- -3'
miRNA:   3'- -CCCCGa--------G-CCGCGUUUGa--GGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 16918 0.74 0.35728
Target:  5'- cGGGccGCUCGGCGCAGACgCCGGuCUGc -3'
miRNA:   3'- -CCC--CGAGCCGCGUUUGaGGUCcGAUu -5'
6479 3' -57.8 NC_001847.1 + 102869 0.73 0.363707
Target:  5'- gGGGGCggaaauuUCGGCGCGGcgggcccgggcccGCUCUGGGCUc- -3'
miRNA:   3'- -CCCCG-------AGCCGCGUU-------------UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 56 0.73 0.363707
Target:  5'- gGGGGCggaaauuUCGGCGCGGcgggcccgggcccGCUCUGGGCUc- -3'
miRNA:   3'- -CCCCG-------AGCCGCGUU-------------UGAGGUCCGAuu -5'
6479 3' -57.8 NC_001847.1 + 119555 0.73 0.365327
Target:  5'- aGGGGCgcgCGGC-CAGACUCUgcGGGCa-- -3'
miRNA:   3'- -CCCCGa--GCCGcGUUUGAGG--UCCGauu -5'
6479 3' -57.8 NC_001847.1 + 49608 0.73 0.365327
Target:  5'- cGGGaGCUCGGCGCGcGCcacCCGGcGCUGu -3'
miRNA:   3'- -CCC-CGAGCCGCGUuUGa--GGUC-CGAUu -5'
6479 3' -57.8 NC_001847.1 + 59565 0.73 0.365327
Target:  5'- gGGGGCggugcCGGCGgAAGCUCU-GGCUGg -3'
miRNA:   3'- -CCCCGa----GCCGCgUUUGAGGuCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 41822 0.73 0.381792
Target:  5'- cGGGCgggCGGCGCGggUcCCAgGGCUGGg -3'
miRNA:   3'- cCCCGa--GCCGCGUuuGaGGU-CCGAUU- -5'
6479 3' -57.8 NC_001847.1 + 31075 0.73 0.398745
Target:  5'- gGGGGCUCGGCGCGccGCUgC-GGCc-- -3'
miRNA:   3'- -CCCCGAGCCGCGUu-UGAgGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 133888 0.73 0.398745
Target:  5'- gGGGGCUCGGCGCGccGCUgC-GGCc-- -3'
miRNA:   3'- -CCCCGAGCCGCGUu-UGAgGuCCGauu -5'
6479 3' -57.8 NC_001847.1 + 50064 0.73 0.4074
Target:  5'- cGGGuccGCgcgCGGCGCGGAC-CCGGGCg-- -3'
miRNA:   3'- -CCC---CGa--GCCGCGUUUGaGGUCCGauu -5'
6479 3' -57.8 NC_001847.1 + 15520 0.73 0.4074
Target:  5'- -cGGCUCGGCGgGAGC-CgCGGGCUGc -3'
miRNA:   3'- ccCCGAGCCGCgUUUGaG-GUCCGAUu -5'
6479 3' -57.8 NC_001847.1 + 58263 0.72 0.416172
Target:  5'- aGGGUUCGGCGCc-AC-CCGGGCa-- -3'
miRNA:   3'- cCCCGAGCCGCGuuUGaGGUCCGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.