Results 21 - 40 of 172 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 87988 | 0.66 | 0.780846 |
Target: 5'- cGGGGCcCGGCugcagaagagcacGCAAACcuucCCGGGCc-- -3' miRNA: 3'- -CCCCGaGCCG-------------CGUUUGa---GGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 86504 | 0.66 | 0.772378 |
Target: 5'- gGGGGCggCGGCGCcccGCcgCCGcGGCg-- -3' miRNA: 3'- -CCCCGa-GCCGCGuu-UGa-GGU-CCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 26487 | 0.66 | 0.772378 |
Target: 5'- aGGGGCgggccUGGUGCAAgGCgggccugCCGGGCg-- -3' miRNA: 3'- -CCCCGa----GCCGCGUU-UGa------GGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 129300 | 0.66 | 0.772378 |
Target: 5'- aGGGGCgggccUGGUGCAAgGCgggccugCCGGGCg-- -3' miRNA: 3'- -CCCCGa----GCCGCGUU-UGa------GGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 6165 | 0.66 | 0.772378 |
Target: 5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3' miRNA: 3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 108978 | 0.66 | 0.772378 |
Target: 5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3' miRNA: 3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 108884 | 0.66 | 0.772378 |
Target: 5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3' miRNA: 3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 43243 | 0.66 | 0.772378 |
Target: 5'- gGGGGCgcgcgggCGGCGCGGcGC-CCGGGg--- -3' miRNA: 3'- -CCCCGa------GCCGCGUU-UGaGGUCCgauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 6071 | 0.66 | 0.772378 |
Target: 5'- aGGGa--GGCGCGgcaauuGugUCCAGGCUc- -3' miRNA: 3'- cCCCgagCCGCGU------UugAGGUCCGAuu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 24524 | 0.66 | 0.772378 |
Target: 5'- cGGGGCUCGcGCGCugcacgauUUCCgugcagAGGUUGGa -3' miRNA: 3'- -CCCCGAGC-CGCGuuu-----GAGG------UCCGAUU- -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 2236 | 0.66 | 0.770482 |
Target: 5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3' miRNA: 3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 105049 | 0.66 | 0.770482 |
Target: 5'- cGGcGCUgGGCGCGGGCgugugguaguccCCGGGCg-- -3' miRNA: 3'- cCC-CGAgCCGCGUUUGa-----------GGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 82558 | 0.66 | 0.766675 |
Target: 5'- cGGGCUCGGCcucggccgccgccuCGAGCUCCAG-CUc- -3' miRNA: 3'- cCCCGAGCCGc-------------GUUUGAGGUCcGAuu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 99812 | 0.66 | 0.762848 |
Target: 5'- --cGCUCGGC---AGCUCCAGGCg-- -3' miRNA: 3'- cccCGAGCCGcguUUGAGGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 105759 | 0.66 | 0.762848 |
Target: 5'- aGGGcCUCGcGCGCGgcAGCUCC-GGCc-- -3' miRNA: 3'- cCCC-GAGC-CGCGU--UUGAGGuCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 1523 | 0.66 | 0.762848 |
Target: 5'- aGGcGGcCUCGGCGCGcGCgaaggcgcCCGGGCc-- -3' miRNA: 3'- -CC-CC-GAGCCGCGUuUGa-------GGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 66338 | 0.66 | 0.762848 |
Target: 5'- cGGGUggGGCGCGGGCgccgCCGuGGCg-- -3' miRNA: 3'- cCCCGagCCGCGUUUGa---GGU-CCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 3426 | 0.66 | 0.762848 |
Target: 5'- gGGGGCgccaGGCGCA-GC-CCAGGg--- -3' miRNA: 3'- -CCCCGag--CCGCGUuUGaGGUCCgauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 56797 | 0.66 | 0.762848 |
Target: 5'- aGGGGCUguucgccgccgCGGCGCccaagCCGGGCc-- -3' miRNA: 3'- -CCCCGA-----------GCCGCGuuugaGGUCCGauu -5' |
|||||||
6479 | 3' | -57.8 | NC_001847.1 | + | 104336 | 0.66 | 0.762848 |
Target: 5'- aGGcGGcCUCGGCGCGcGCgaaggcgcCCGGGCc-- -3' miRNA: 3'- -CC-CC-GAGCCGCGUuUGa-------GGUCCGauu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home