Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6479 | 5' | -57.9 | NC_001847.1 | + | 74130 | 0.66 | 0.790835 |
Target: 5'- cGUgGUGCUGcgCgUGGCgCCgGGGCGa -3' miRNA: 3'- cUAgCGCGACuaGaACCG-GGgCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 112715 | 0.67 | 0.734068 |
Target: 5'- cGAcCGCG-UGGUCUcgGGCCCCGcccccGCGg -3' miRNA: 3'- -CUaGCGCgACUAGAa-CCGGGGCu----CGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 65742 | 0.67 | 0.772387 |
Target: 5'- ---gGCGCUcGAgagCguggUGGCCCgCGGGCGc -3' miRNA: 3'- cuagCGCGA-CUa--Ga---ACCGGG-GCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 74287 | 0.67 | 0.772387 |
Target: 5'- -cUCGCGCUGGccUCggcgGGCgCgGAGCu -3' miRNA: 3'- cuAGCGCGACU--AGaa--CCGgGgCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 132222 | 0.67 | 0.772387 |
Target: 5'- --cCGCGCUGGcggCgcggaccgUGGCCCCGcucGCGc -3' miRNA: 3'- cuaGCGCGACUa--Ga-------ACCGGGGCu--CGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 29694 | 0.66 | 0.781678 |
Target: 5'- uGAUgGCGCUGAUCgcuUGGgCgCGAgacuGCGg -3' miRNA: 3'- -CUAgCGCGACUAGa--ACCgGgGCU----CGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 133445 | 0.66 | 0.781678 |
Target: 5'- uGAUCGUGCUcGAcgCcgUGGaCCCCGAGa- -3' miRNA: 3'- -CUAGCGCGA-CUa-Ga-ACC-GGGGCUCgc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 64970 | 0.66 | 0.781678 |
Target: 5'- --aCGUGCUGGcCagcGGCCCgGAGCa -3' miRNA: 3'- cuaGCGCGACUaGaa-CCGGGgCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 53032 | 0.66 | 0.790835 |
Target: 5'- --gCGCGCUcgGGcCUcGGCUCCGAGCc -3' miRNA: 3'- cuaGCGCGA--CUaGAaCCGGGGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 77711 | 0.67 | 0.724245 |
Target: 5'- cGcgCGCGCUGGUgcgcgCUUGGCgCgCGuGCGa -3' miRNA: 3'- -CuaGCGCGACUA-----GAACCGgG-GCuCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 23838 | 0.67 | 0.724245 |
Target: 5'- --gCGCGCg---CacGGCCCCGAGCc -3' miRNA: 3'- cuaGCGCGacuaGaaCCGGGGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 5807 | 0.68 | 0.714343 |
Target: 5'- --cCGCGCuUGcgCUUGGCgCgCCGGGUGc -3' miRNA: 3'- cuaGCGCG-ACuaGAACCG-G-GGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 39900 | 0.71 | 0.503091 |
Target: 5'- cGAUCGCGCccccGAUCgc-GCCCCGAucGCGc -3' miRNA: 3'- -CUAGCGCGa---CUAGaacCGGGGCU--CGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 34028 | 0.7 | 0.542282 |
Target: 5'- --cCGCGCUGGgccaggCgaugGGCCCCGcGGCGc -3' miRNA: 3'- cuaGCGCGACUa-----Gaa--CCGGGGC-UCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 107030 | 0.7 | 0.592575 |
Target: 5'- cGUCGCcgGCcucGGUCcUGGCCCCGAGgGc -3' miRNA: 3'- cUAGCG--CGa--CUAGaACCGGGGCUCgC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 14036 | 0.69 | 0.612939 |
Target: 5'- ---gGCGCUGGUC--GGCCgCGAGCc -3' miRNA: 3'- cuagCGCGACUAGaaCCGGgGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 44852 | 0.68 | 0.663965 |
Target: 5'- --gCGCGCUcgccgaGGUUUUGGCccaaCCCGAGCu -3' miRNA: 3'- cuaGCGCGA------CUAGAACCG----GGGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 9902 | 0.68 | 0.674127 |
Target: 5'- cGUCGCGCUcg---UGGCCgCCGAGUa -3' miRNA: 3'- cUAGCGCGAcuagaACCGG-GGCUCGc -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 5353 | 0.68 | 0.68122 |
Target: 5'- uGGUCGCGCgGcgCggccgGGCCcaggcuccggcgguCCGAGCGg -3' miRNA: 3'- -CUAGCGCGaCuaGaa---CCGG--------------GGCUCGC- -5' |
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6479 | 5' | -57.9 | NC_001847.1 | + | 41607 | 0.68 | 0.694338 |
Target: 5'- cGUgGCGUUGuUCUgcuccgccgugaUGGCCgCGAGCGg -3' miRNA: 3'- cUAgCGCGACuAGA------------ACCGGgGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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