miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 5' -57.9 NC_001847.1 + 29409 0.67 0.772387
Target:  5'- --cCGCGCUGGcggCgcggaccgUGGCCCCGcucGCGc -3'
miRNA:   3'- cuaGCGCGACUa--Ga-------ACCGGGGCu--CGC- -5'
6479 5' -57.9 NC_001847.1 + 14394 0.67 0.772387
Target:  5'- -cUCGCcgaGCUGGcgUCgaGGCCCCGcucgcAGCGg -3'
miRNA:   3'- cuAGCG---CGACU--AGaaCCGGGGC-----UCGC- -5'
6479 5' -57.9 NC_001847.1 + 71434 0.67 0.772387
Target:  5'- gGAggGUGCacacgacGAggUUGGCCCCGGGCGc -3'
miRNA:   3'- -CUagCGCGa------CUagAACCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 74287 0.67 0.772387
Target:  5'- -cUCGCGCUGGccUCggcgGGCgCgGAGCu -3'
miRNA:   3'- cuAGCGCGACU--AGaa--CCGgGgCUCGc -5'
6479 5' -57.9 NC_001847.1 + 65742 0.67 0.772387
Target:  5'- ---gGCGCUcGAgagCguggUGGCCCgCGGGCGc -3'
miRNA:   3'- cuagCGCGA-CUa--Ga---ACCGGG-GCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 125547 0.67 0.771451
Target:  5'- cGGUCGUccccgcggcugcgGCUcGAUCgcGGCCgCGGGCGg -3'
miRNA:   3'- -CUAGCG-------------CGA-CUAGaaCCGGgGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 87239 0.67 0.762972
Target:  5'- -uUCG-GCUGGUaccggcUGcGCCCCGGGCGc -3'
miRNA:   3'- cuAGCgCGACUAga----AC-CGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 38148 0.67 0.75344
Target:  5'- -uUCGCGCgGcgCgccGCCCCGAGgGa -3'
miRNA:   3'- cuAGCGCGaCuaGaacCGGGGCUCgC- -5'
6479 5' -57.9 NC_001847.1 + 122349 0.67 0.75344
Target:  5'- --aCGCGCUGAUCguugGGCggCGuGCGg -3'
miRNA:   3'- cuaGCGCGACUAGaa--CCGggGCuCGC- -5'
6479 5' -57.9 NC_001847.1 + 112715 0.67 0.734068
Target:  5'- cGAcCGCG-UGGUCUcgGGCCCCGcccccGCGg -3'
miRNA:   3'- -CUaGCGCgACUAGAa-CCGGGGCu----CGC- -5'
6479 5' -57.9 NC_001847.1 + 9902 0.67 0.734068
Target:  5'- cGAcCGCG-UGGUCUcgGGCCCCGcccccGCGg -3'
miRNA:   3'- -CUaGCGCgACUAGAa-CCGGGGCu----CGC- -5'
6479 5' -57.9 NC_001847.1 + 23838 0.67 0.724245
Target:  5'- --gCGCGCg---CacGGCCCCGAGCc -3'
miRNA:   3'- cuaGCGCGacuaGaaCCGGGGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 77711 0.67 0.724245
Target:  5'- cGcgCGCGCUGGUgcgcgCUUGGCgCgCGuGCGa -3'
miRNA:   3'- -CuaGCGCGACUA-----GAACCGgG-GCuCGC- -5'
6479 5' -57.9 NC_001847.1 + 5807 0.68 0.714343
Target:  5'- --cCGCGCuUGcgCUUGGCgCgCCGGGUGc -3'
miRNA:   3'- cuaGCGCG-ACuaGAACCG-G-GGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 50006 0.68 0.695344
Target:  5'- --cCGCGCgcccaccgccugCUgGGCCCCGGGCGc -3'
miRNA:   3'- cuaGCGCGacua--------GAaCCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 41607 0.68 0.694338
Target:  5'- cGUgGCGUUGuUCUgcuccgccgugaUGGCCgCGAGCGg -3'
miRNA:   3'- cUAgCGCGACuAGA------------ACCGGgGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 5353 0.68 0.68122
Target:  5'- uGGUCGCGCgGcgCggccgGGCCcaggcuccggcgguCCGAGCGg -3'
miRNA:   3'- -CUAGCGCGaCuaGaa---CCGG--------------GGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 104535 0.68 0.674127
Target:  5'- ---gGCGCUGcgCggcGGCCCCGGGg- -3'
miRNA:   3'- cuagCGCGACuaGaa-CCGGGGCUCgc -5'
6479 5' -57.9 NC_001847.1 + 9902 0.68 0.674127
Target:  5'- cGUCGCGCUcg---UGGCCgCCGAGUa -3'
miRNA:   3'- cUAGCGCGAcuagaACCGG-GGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 44852 0.68 0.663965
Target:  5'- --gCGCGCUcgccgaGGUUUUGGCccaaCCCGAGCu -3'
miRNA:   3'- cuaGCGCGA------CUAGAACCG----GGGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.