miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 3' -53.9 NC_001847.1 + 125380 0.66 0.946702
Target:  5'- aCCGgGGggcgcgcgaggucgaGGUGGACC-GACGGCGAc -3'
miRNA:   3'- aGGUgUCa--------------CUAUCUGGaCUGCCGCUu -5'
6480 3' -53.9 NC_001847.1 + 71673 0.66 0.941615
Target:  5'- cCCAUGGUGAUGuacaucaacgcGuACCUGggcaACGGCGAGc -3'
miRNA:   3'- aGGUGUCACUAU-----------C-UGGAC----UGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 14561 0.66 0.941615
Target:  5'- gCCGCAGcGcgGGugCUGGCgGGCGc- -3'
miRNA:   3'- aGGUGUCaCuaUCugGACUG-CCGCuu -5'
6480 3' -53.9 NC_001847.1 + 84018 0.66 0.936726
Target:  5'- gCCACGccuGUGGUGG-UC-GACGGCGAGc -3'
miRNA:   3'- aGGUGU---CACUAUCuGGaCUGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 44023 0.66 0.936726
Target:  5'- gCCGCGuGUGugcGGGCUUGugGGCGc- -3'
miRNA:   3'- aGGUGU-CACua-UCUGGACugCCGCuu -5'
6480 3' -53.9 NC_001847.1 + 95341 0.66 0.93521
Target:  5'- gCCGCGGacgacgcggucgacUGGcgGGGgCUGGCGGCGGAc -3'
miRNA:   3'- aGGUGUC--------------ACUa-UCUgGACUGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 59026 0.66 0.931584
Target:  5'- gCgACGGUGGcgGGugC-GGCGGCGGAg -3'
miRNA:   3'- aGgUGUCACUa-UCugGaCUGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 74800 0.66 0.931584
Target:  5'- uUCgACGGgcccucGGUAGugCgUGugGGCGAAa -3'
miRNA:   3'- -AGgUGUCa-----CUAUCugG-ACugCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 20180 0.66 0.931584
Target:  5'- gUCUACgaAGUcGUAGACCgcggGGCGGCGc- -3'
miRNA:   3'- -AGGUG--UCAcUAUCUGGa---CUGCCGCuu -5'
6480 3' -53.9 NC_001847.1 + 554 0.66 0.920535
Target:  5'- cUCCGgGGgcacGAUuGACCUGccugGCGGCGAc -3'
miRNA:   3'- -AGGUgUCa---CUAuCUGGAC----UGCCGCUu -5'
6480 3' -53.9 NC_001847.1 + 54582 0.67 0.91463
Target:  5'- cCCGCGGgcUGGgcGGCgCUGGCGGCGc- -3'
miRNA:   3'- aGGUGUC--ACUauCUG-GACUGCCGCuu -5'
6480 3' -53.9 NC_001847.1 + 117313 0.67 0.895404
Target:  5'- gCCGCGaUGGgcGACCUaGCGGCGGGg -3'
miRNA:   3'- aGGUGUcACUauCUGGAcUGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 79920 0.68 0.881358
Target:  5'- gUCCGCAGUGGaAGACggacgcaaaGACGGCGc- -3'
miRNA:   3'- -AGGUGUCACUaUCUGga-------CUGCCGCuu -5'
6480 3' -53.9 NC_001847.1 + 38738 0.68 0.873979
Target:  5'- cCCGCAGUcGAcugcGACCagcgUGGCGGCGGg -3'
miRNA:   3'- aGGUGUCA-CUau--CUGG----ACUGCCGCUu -5'
6480 3' -53.9 NC_001847.1 + 32921 0.69 0.842219
Target:  5'- gCCGCGGacggGAggAGGCC-GGCGGCGGGg -3'
miRNA:   3'- aGGUGUCa---CUa-UCUGGaCUGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 32964 0.7 0.788662
Target:  5'- -gCGCGGUGGccGACUUGGCGGCuGAGc -3'
miRNA:   3'- agGUGUCACUauCUGGACUGCCG-CUU- -5'
6480 3' -53.9 NC_001847.1 + 71892 0.7 0.779157
Target:  5'- -aCGCGGUGAUGG-CgCUGcaGCGGCGGAc -3'
miRNA:   3'- agGUGUCACUAUCuG-GAC--UGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 34459 0.7 0.76951
Target:  5'- gCCGCGGUGGcc-GCC-GGCGGCGAGg -3'
miRNA:   3'- aGGUGUCACUaucUGGaCUGCCGCUU- -5'
6480 3' -53.9 NC_001847.1 + 34025 1.06 0.005415
Target:  5'- cUCCACAGUGAUAGACCUGACGGCGAAc -3'
miRNA:   3'- -AGGUGUCACUAUCUGGACUGCCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.