miRNA display CGI


Results 21 - 40 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 130738 0.66 0.335719
Target:  5'- uGCCgCCGUCGGCgucgaCGGCggcgaCCGUGGCGc -3'
miRNA:   3'- -CGG-GGCGGCUGg----GCCGgg---GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 47805 0.66 0.335719
Target:  5'- gGCCCUcgGCCGACaCCGGggacgggaUgCCgGCGGCc -3'
miRNA:   3'- -CGGGG--CGGCUG-GGCC--------GgGGgCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 15398 0.66 0.335719
Target:  5'- cUUCCGCCaGCUgggCGGCCCUggagCGCGGCa -3'
miRNA:   3'- cGGGGCGGcUGG---GCCGGGG----GCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 125553 0.66 0.335719
Target:  5'- uCCCCGCggcugcggcuCGAUCgCGGCCgCgGgCGGCGg -3'
miRNA:   3'- cGGGGCG----------GCUGG-GCCGGgGgC-GCCGC- -5'
6480 5' -70.3 NC_001847.1 + 121248 0.66 0.335719
Target:  5'- aGCCaCCGUCGuggcACUgGGCUCCCGgccaaaGGCGc -3'
miRNA:   3'- -CGG-GGCGGC----UGGgCCGGGGGCg-----CCGC- -5'
6480 5' -70.3 NC_001847.1 + 39592 0.66 0.335033
Target:  5'- gGCCCCaGCgcugcugCGGCgCGGCCCCagccccaGgGGCa -3'
miRNA:   3'- -CGGGG-CG-------GCUGgGCCGGGGg------CgCCGc -5'
6480 5' -70.3 NC_001847.1 + 1185 0.66 0.328909
Target:  5'- gGCCaCCGCCGcGgCCGGCagCUCGUcgGGCGc -3'
miRNA:   3'- -CGG-GGCGGC-UgGGCCGg-GGGCG--CCGC- -5'
6480 5' -70.3 NC_001847.1 + 31136 0.66 0.328909
Target:  5'- gGCgCCCGaCGAgcugCCGGCCgCgGCGGUGg -3'
miRNA:   3'- -CG-GGGCgGCUg---GGCCGGgGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 133949 0.66 0.328909
Target:  5'- gGCgCCCGaCGAgcugCCGGCCgCgGCGGUGg -3'
miRNA:   3'- -CG-GGGCgGCUg---GGCCGGgGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 115647 0.66 0.328909
Target:  5'- aUCCCGCgacaCGACCCgacguucuugGGCaCCCauggagcgCGCGGCGg -3'
miRNA:   3'- cGGGGCG----GCUGGG----------CCG-GGG--------GCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 115339 0.66 0.328909
Target:  5'- cGCCCCGCCaccGCCaccGCCUCCGCcGaCGa -3'
miRNA:   3'- -CGGGGCGGc--UGGgc-CGGGGGCGcC-GC- -5'
6480 5' -70.3 NC_001847.1 + 53567 0.66 0.328909
Target:  5'- cGCuCCCGuaGcCgCCGGCCCCgCGCaGCu -3'
miRNA:   3'- -CG-GGGCggCuG-GGCCGGGG-GCGcCGc -5'
6480 5' -70.3 NC_001847.1 + 115787 0.66 0.328909
Target:  5'- gGCCaCCGUCgggcgcgcgcaaGACCCGGCC---GCGGCGc -3'
miRNA:   3'- -CGG-GGCGG------------CUGGGCCGGgggCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 103998 0.66 0.328909
Target:  5'- gGCCaCCGCCGcGgCCGGCagCUCGUcgGGCGc -3'
miRNA:   3'- -CGG-GGCGGC-UgGGCCGg-GGGCG--CCGC- -5'
6480 5' -70.3 NC_001847.1 + 19409 0.66 0.328909
Target:  5'- uGCCCaugGCC-ACCaGcGCgCCCGUGGCGg -3'
miRNA:   3'- -CGGGg--CGGcUGGgC-CGgGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 51966 0.66 0.328909
Target:  5'- cCCCCGCCG-UCC-GCCagCCCGUcgGGCGu -3'
miRNA:   3'- cGGGGCGGCuGGGcCGG--GGGCG--CCGC- -5'
6480 5' -70.3 NC_001847.1 + 74258 0.66 0.328909
Target:  5'- uGCCgCCGCUG-CUgGGgCCCgCGCGcGCGc -3'
miRNA:   3'- -CGG-GGCGGCuGGgCCgGGG-GCGC-CGC- -5'
6480 5' -70.3 NC_001847.1 + 55441 0.66 0.328909
Target:  5'- gGUCCUGCagcGCCUGGCgCCgGCGGgGc -3'
miRNA:   3'- -CGGGGCGgc-UGGGCCGgGGgCGCCgC- -5'
6480 5' -70.3 NC_001847.1 + 106696 0.66 0.328909
Target:  5'- cGgCCCGUCG-CgCGGCg-CCGCGGCGu -3'
miRNA:   3'- -CgGGGCGGCuGgGCCGggGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 91800 0.66 0.328909
Target:  5'- cGCUUCGUCGGCgUcGCgCCgCGCGGCGa -3'
miRNA:   3'- -CGGGGCGGCUGgGcCGgGG-GCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.