miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 3' -53.5 NC_001847.1 + 119258 0.66 0.961352
Target:  5'- ---uUAUGGCGGCGCCCGcgcggcucGUCg---- -3'
miRNA:   3'- gcauAUAUCGCCGCGGGC--------CAGacaac -5'
6481 3' -53.5 NC_001847.1 + 71258 0.66 0.957655
Target:  5'- ----gAUGGUGGCGCCCGG-Ca---- -3'
miRNA:   3'- gcauaUAUCGCCGCGGGCCaGacaac -5'
6481 3' -53.5 NC_001847.1 + 125315 0.66 0.953722
Target:  5'- cCGUGgcucAUGGCGGCGgCgggccgggCCGGUCUGc-- -3'
miRNA:   3'- -GCAUa---UAUCGCCGC-G--------GGCCAGACaac -5'
6481 3' -53.5 NC_001847.1 + 22502 0.66 0.953722
Target:  5'- cCGUGgcucAUGGCGGCGgCgggccgggCCGGUCUGc-- -3'
miRNA:   3'- -GCAUa---UAUCGCCGC-G--------GGCCAGACaac -5'
6481 3' -53.5 NC_001847.1 + 97047 0.66 0.949551
Target:  5'- ------cAGCGGCGUCCGGgCUGc-- -3'
miRNA:   3'- gcauauaUCGCCGCGGGCCaGACaac -5'
6481 3' -53.5 NC_001847.1 + 31745 0.67 0.940476
Target:  5'- -aUGUcgAGCGGCGCgUGGUCa---- -3'
miRNA:   3'- gcAUAuaUCGCCGCGgGCCAGacaac -5'
6481 3' -53.5 NC_001847.1 + 81058 0.67 0.935567
Target:  5'- aCGUGggcgugGGCGGgGCCUGG-CUGg-- -3'
miRNA:   3'- -GCAUaua---UCGCCgCGGGCCaGACaac -5'
6481 3' -53.5 NC_001847.1 + 28062 0.67 0.925
Target:  5'- -----cUGGCGGaaaaccuGCCCGGUCUGg-- -3'
miRNA:   3'- gcauauAUCGCCg------CGGGCCAGACaac -5'
6481 3' -53.5 NC_001847.1 + 12952 0.67 0.925
Target:  5'- gGUGg--GGCGGCgggccgggggugGCCCGGUCgcugGUUc -3'
miRNA:   3'- gCAUauaUCGCCG------------CGGGCCAGa---CAAc -5'
6481 3' -53.5 NC_001847.1 + 60707 0.68 0.91343
Target:  5'- ----gGUAGCGGCGCCCGuUgUGg-- -3'
miRNA:   3'- gcauaUAUCGCCGCGGGCcAgACaac -5'
6481 3' -53.5 NC_001847.1 + 33805 0.68 0.907272
Target:  5'- -------cGCGGCGCCCGGcgcgCUGg-- -3'
miRNA:   3'- gcauauauCGCCGCGGGCCa---GACaac -5'
6481 3' -53.5 NC_001847.1 + 86774 0.68 0.880204
Target:  5'- ------cGGCGGCGCCaCGGUCg--UGa -3'
miRNA:   3'- gcauauaUCGCCGCGG-GCCAGacaAC- -5'
6481 3' -53.5 NC_001847.1 + 1065 0.69 0.872848
Target:  5'- ------cGGCGGCGCCgGG-CUGUUc -3'
miRNA:   3'- gcauauaUCGCCGCGGgCCaGACAAc -5'
6481 3' -53.5 NC_001847.1 + 111253 0.7 0.832801
Target:  5'- gGUcgGaGGCGGCGCCgGGUCg---- -3'
miRNA:   3'- gCAuaUaUCGCCGCGGgCCAGacaac -5'
6481 3' -53.5 NC_001847.1 + 8440 0.7 0.832801
Target:  5'- gGUcgGaGGCGGCGCCgGGUCg---- -3'
miRNA:   3'- gCAuaUaUCGCCGCGGgCCAGacaac -5'
6481 3' -53.5 NC_001847.1 + 32525 1.08 0.004903
Target:  5'- gCGUAUAUAGCGGCGCCCGGUCUGUUGu -3'
miRNA:   3'- -GCAUAUAUCGCCGCGGGCCAGACAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.