miRNA display CGI


Results 121 - 140 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 115299 0.66 0.507464
Target:  5'- cCCCGggcGCGGGccaagGGCGCUGugucgacaaaagccaCcCCGCCGCu -3'
miRNA:   3'- -GGGU---CGUCCua---CCGCGGC---------------G-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 63535 0.66 0.541082
Target:  5'- gUCCGcGCugc-UGGCGCCGCCUggGCCGg -3'
miRNA:   3'- -GGGU-CGuccuACCGCGGCGGG--CGGCg -5'
6481 5' -64.2 NC_001847.1 + 88598 0.66 0.494629
Target:  5'- gCgCGGCuGGAggaccucgcGcGCGCCG-CCGCCGCc -3'
miRNA:   3'- -GgGUCGuCCUa--------C-CGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 71109 0.66 0.522303
Target:  5'- gCCCAggcgugaaccGCGGGcaaGC-CCGuCCCGCCGCc -3'
miRNA:   3'- -GGGU----------CGUCCuacCGcGGC-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 12958 0.66 0.522303
Target:  5'- -gCGGCGGGccgGGgGUgGCCCgGUCGCu -3'
miRNA:   3'- ggGUCGUCCua-CCgCGgCGGG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 17670 0.66 0.541082
Target:  5'- aCCAGagcucCAGGcgcgcaccgccaGUGGCGUUgucgGCCaCGCCGCa -3'
miRNA:   3'- gGGUC-----GUCC------------UACCGCGG----CGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 21338 0.66 0.540137
Target:  5'- gCCAuuguggcGCAGacGAUGcGCGCCGUCgGCgGCu -3'
miRNA:   3'- gGGU-------CGUC--CUAC-CGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 71068 0.66 0.531663
Target:  5'- aCCCGGUgcuGGc-GGCGCuCGgCCGgCGCg -3'
miRNA:   3'- -GGGUCGu--CCuaCCGCG-GCgGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 31011 0.66 0.541082
Target:  5'- gUCCGGCGuuGccGGCGCgCGCgCGCCGg -3'
miRNA:   3'- -GGGUCGUc-CuaCCGCG-GCGgGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 29560 0.66 0.541082
Target:  5'- cCCCcGCAcGGAcgccGUGCCGgCUGCCGUc -3'
miRNA:   3'- -GGGuCGU-CCUac--CGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 78233 0.66 0.522303
Target:  5'- cCCgGGCGGGuucgcccUGGagGCCGacgUCGCCGCg -3'
miRNA:   3'- -GGgUCGUCCu------ACCg-CGGCg--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 43003 0.66 0.513008
Target:  5'- gCCGcCGGGggGGCG-CGCCgGgCCGCc -3'
miRNA:   3'- gGGUcGUCCuaCCGCgGCGGgC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 27494 0.66 0.541082
Target:  5'- uUCGGCGGcaGA-GGCcucgGCCG-CCGCCGCg -3'
miRNA:   3'- gGGUCGUC--CUaCCG----CGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 87844 0.66 0.521371
Target:  5'- gCCGGCGGGcgugAUGGCccgcgggccugugGUCGCUgugGCCGCg -3'
miRNA:   3'- gGGUCGUCC----UACCG-------------CGGCGGg--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 59931 0.66 0.550556
Target:  5'- gCCGGCGGaagGGCGCCacgcaagcGUCCGgCGUg -3'
miRNA:   3'- gGGUCGUCcuaCCGCGG--------CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 54523 0.66 0.550556
Target:  5'- -gCGGUGGGgcGGgGCCGUCCGggggCGCa -3'
miRNA:   3'- ggGUCGUCCuaCCgCGGCGGGCg---GCG- -5'
6481 5' -64.2 NC_001847.1 + 100517 0.66 0.530724
Target:  5'- cCUCGGCGcgcaGGCGCCggacuuccucggcGCgCCGCCGCg -3'
miRNA:   3'- -GGGUCGUccuaCCGCGG-------------CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 107700 0.66 0.494629
Target:  5'- -gCGGCAGGGcccccGCGCCGCugcgaacgacaCCGaCCGCg -3'
miRNA:   3'- ggGUCGUCCUac---CGCGGCG-----------GGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 81234 0.66 0.494629
Target:  5'- -gCAGCGgcGGcgGGCcagGCUggGCCUGCCGCu -3'
miRNA:   3'- ggGUCGU--CCuaCCG---CGG--CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 92270 0.66 0.541082
Target:  5'- gCCCAcUAGcGUGGCGCgGUgCGCgGCu -3'
miRNA:   3'- -GGGUcGUCcUACCGCGgCGgGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.