miRNA display CGI


Results 81 - 100 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 58308 0.75 0.142818
Target:  5'- gCCGGCAGGccggcAUGGCGCCGCguauagugcacaaaCUGCCaGCa -3'
miRNA:   3'- gGGUCGUCC-----UACCGCGGCG--------------GGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 34528 0.75 0.143869
Target:  5'- gCCGGC--GAU-GCGCCGCCCGCCGg -3'
miRNA:   3'- gGGUCGucCUAcCGCGGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 49910 0.75 0.143869
Target:  5'- gCCCGGCcGcGGUGGCGCUGCgCGUgCGCa -3'
miRNA:   3'- -GGGUCGuC-CUACCGCGGCGgGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 38278 0.75 0.147424
Target:  5'- cCCCAGCGcGGAc--CGCCGCCCaccGCCGCc -3'
miRNA:   3'- -GGGUCGU-CCUaccGCGGCGGG---CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 100616 0.75 0.153277
Target:  5'- gCCCGGCGGGcggcgcaucgccGGCGCCGUCCGCgucggccucgcuCGCa -3'
miRNA:   3'- -GGGUCGUCCua----------CCGCGGCGGGCG------------GCG- -5'
6481 5' -64.2 NC_001847.1 + 133194 0.75 0.154773
Target:  5'- gCCCGGCgAGGAcgagcgccGGCggcccgagugGCCGCCgCGCCGCg -3'
miRNA:   3'- -GGGUCG-UCCUa-------CCG----------CGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 97890 0.75 0.154773
Target:  5'- -gCGGCGcGGAUGGCgaacagcgcGCCGUCCGCCGg -3'
miRNA:   3'- ggGUCGU-CCUACCG---------CGGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 3945 0.75 0.154773
Target:  5'- gCCgCGGCGGGGggGGCGCCGUCUccgGCgGCg -3'
miRNA:   3'- -GG-GUCGUCCUa-CCGCGGCGGG---CGgCG- -5'
6481 5' -64.2 NC_001847.1 + 108066 0.75 0.154773
Target:  5'- cUCCAGCGuGGGcgcGGUGCCGCCCgggggGCUGCg -3'
miRNA:   3'- -GGGUCGU-CCUa--CCGCGGCGGG-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 30381 0.75 0.154773
Target:  5'- gCCCGGCgAGGAcgagcgccGGCggcccgagugGCCGCCgCGCCGCg -3'
miRNA:   3'- -GGGUCG-UCCUa-------CCG----------CGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 81820 0.75 0.158188
Target:  5'- -gCGGCGGGGc-GCGCCgucugucGCCCGCCGCa -3'
miRNA:   3'- ggGUCGUCCUacCGCGG-------CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 104141 0.75 0.158571
Target:  5'- gCCGGCAacgccGGAcaUGGUGCCGCUuCGCUGCu -3'
miRNA:   3'- gGGUCGU-----CCU--ACCGCGGCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 32132 0.75 0.158571
Target:  5'- gCCGGCGcug-GGCGCCGCCgCGcCCGCg -3'
miRNA:   3'- gGGUCGUccuaCCGCGGCGG-GC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 44297 0.75 0.158571
Target:  5'- cCCCGGCcccggGGCGCCGCUCGCUGa -3'
miRNA:   3'- -GGGUCGuccuaCCGCGGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 114942 0.74 0.162453
Target:  5'- gUuuGGCGGGGcggGGCGCCGcCCCGCgGUc -3'
miRNA:   3'- -GggUCGUCCUa--CCGCGGC-GGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 103787 0.74 0.162453
Target:  5'- aCCCGGCcGGcgGGgcuucCGCCGCCgGCgGCg -3'
miRNA:   3'- -GGGUCGuCCuaCC-----GCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 57009 0.74 0.162453
Target:  5'- gCC-GCAGGccGGCGCgCGCCCGCUuuugGCg -3'
miRNA:   3'- gGGuCGUCCuaCCGCG-GCGGGCGG----CG- -5'
6481 5' -64.2 NC_001847.1 + 65428 0.74 0.162453
Target:  5'- cUCCGGgAGGc-GGCaGCCGCgCGCCGCg -3'
miRNA:   3'- -GGGUCgUCCuaCCG-CGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 106071 0.74 0.166421
Target:  5'- -gCGGCAGGGgcgccGGCGCCGCgCgGCCGg -3'
miRNA:   3'- ggGUCGUCCUa----CCGCGGCG-GgCGGCg -5'
6481 5' -64.2 NC_001847.1 + 115705 0.74 0.166421
Target:  5'- gCCCGGCAGcGGgcgcgcggccuuUGGCGCUcccgcuuuGCCUGCUGCg -3'
miRNA:   3'- -GGGUCGUC-CU------------ACCGCGG--------CGGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.