miRNA display CGI


Results 101 - 120 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 3258 0.74 0.166421
Target:  5'- -gCGGCAGGGgcgccGGCGCCGCgCgGCCGg -3'
miRNA:   3'- ggGUCGUCCUa----CCGCGGCG-GgCGGCg -5'
6481 5' -64.2 NC_001847.1 + 31424 0.74 0.166421
Target:  5'- gCCGGCGGGc-GGCgGCCGgCgGCCGCg -3'
miRNA:   3'- gGGUCGUCCuaCCG-CGGCgGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 15915 0.74 0.166421
Target:  5'- uCCCAGCucgucguccguGGGGUaGGCGaaGCCCGCCa- -3'
miRNA:   3'- -GGGUCG-----------UCCUA-CCGCggCGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 115705 0.74 0.166421
Target:  5'- gCCCGGCAGcGGgcgcgcggccuuUGGCGCUcccgcuuuGCCUGCUGCg -3'
miRNA:   3'- -GGGUCGUC-CU------------ACCGCGG--------CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 39352 0.74 0.166421
Target:  5'- aCCAGUA-GAUGcgcccGCGCCGCCCcCCGCg -3'
miRNA:   3'- gGGUCGUcCUAC-----CGCGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 9653 0.74 0.166421
Target:  5'- cUCgAGCAGccgGGCGUccucgCGCCCGCCGCg -3'
miRNA:   3'- -GGgUCGUCcuaCCGCG-----GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 39755 0.74 0.169249
Target:  5'- cCCCGGCGccggccucagagccGGc-GGCGCgGUCCGCCGCc -3'
miRNA:   3'- -GGGUCGU--------------CCuaCCGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 41127 0.74 0.170066
Target:  5'- uCCCGGCAGGcgcggacAUGGCGUCGUCgaaCCGCg -3'
miRNA:   3'- -GGGUCGUCC-------UACCGCGGCGGgc-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 39616 0.74 0.170066
Target:  5'- cCCCAGCcccAGGGgcaagccUGGCG-CGCCCGCCa- -3'
miRNA:   3'- -GGGUCG---UCCU-------ACCGCgGCGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 2321 0.74 0.170475
Target:  5'- cCCCAGCacgcGGGcgGGCaGCgGCggcucCCGCCGCg -3'
miRNA:   3'- -GGGUCG----UCCuaCCG-CGgCG-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134040 0.74 0.170475
Target:  5'- gCC-GCGGc--GGCGCCGCCCGCgGCc -3'
miRNA:   3'- gGGuCGUCcuaCCGCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 5658 0.74 0.170475
Target:  5'- gUCCAGC-GGAUGcGCGCCGUCgcgCGCgGCg -3'
miRNA:   3'- -GGGUCGuCCUAC-CGCGGCGG---GCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 105134 0.74 0.170475
Target:  5'- cCCCAGCacgcGGGcgGGCaGCgGCggcucCCGCCGCg -3'
miRNA:   3'- -GGGUCG----UCCuaCCG-CGgCG-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31227 0.74 0.170475
Target:  5'- gCC-GCGGc--GGCGCCGCCCGCgGCc -3'
miRNA:   3'- gGGuCGUCcuaCCGCGGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 57076 0.74 0.172121
Target:  5'- cCCCAGCGcGGcggccagcgcugcgcUGGacCGCCGCgCCGCCGCg -3'
miRNA:   3'- -GGGUCGUcCU---------------ACC--GCGGCG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 84768 0.74 0.174617
Target:  5'- gCCGGCGGc--GGCGCCGUCCuuagcgucgGCCGCg -3'
miRNA:   3'- gGGUCGUCcuaCCGCGGCGGG---------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 128131 0.74 0.174617
Target:  5'- gCUGGC-GGAUGcGCgGCCGCUCGUCGCg -3'
miRNA:   3'- gGGUCGuCCUAC-CG-CGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 49900 0.74 0.174617
Target:  5'- aCUCGcGCAcc-UGGCGCCGCCgGCCGCc -3'
miRNA:   3'- -GGGU-CGUccuACCGCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132671 0.74 0.174617
Target:  5'- -aCGGCGGcGggGGCGCCGCCgC-CCGCu -3'
miRNA:   3'- ggGUCGUC-CuaCCGCGGCGG-GcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 50815 0.74 0.174617
Target:  5'- gCCGGUacgguuuuacGGGggGGCGCUGCCCG-CGCc -3'
miRNA:   3'- gGGUCG----------UCCuaCCGCGGCGGGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.