miRNA display CGI


Results 121 - 140 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 84768 0.74 0.174617
Target:  5'- gCCGGCGGc--GGCGCCGUCCuuagcgucgGCCGCg -3'
miRNA:   3'- gGGUCGUCcuaCCGCGGCGGG---------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2555 0.74 0.175036
Target:  5'- cUCCGGCGGGcugucuucggcgcgGGCGCCuGCgcggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCCua------------CCGCGG-CG----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 72416 0.74 0.178421
Target:  5'- uCCCAGCGGGGcaUGcGCGUgcucagagugacgCGCCUGCCGg -3'
miRNA:   3'- -GGGUCGUCCU--AC-CGCG-------------GCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 29995 0.74 0.178848
Target:  5'- gCgCGGCGGGAgccGcCGCUGCCCGcCCGCg -3'
miRNA:   3'- -GgGUCGUCCUac-C-GCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 101898 0.74 0.178848
Target:  5'- aCCgCGGCAGcGGaGGCGCCgcggcGCCCGgCGCg -3'
miRNA:   3'- -GG-GUCGUC-CUaCCGCGG-----CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 60534 0.74 0.178848
Target:  5'- gCCCAGCugcacGAUGGCGuuGgCCaCGCCGUc -3'
miRNA:   3'- -GGGUCGuc---CUACCGCggC-GG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132808 0.74 0.178848
Target:  5'- gCgCGGCGGGAgccGcCGCUGCCCGcCCGCg -3'
miRNA:   3'- -GgGUCGUCCUac-C-GCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 53856 0.74 0.178848
Target:  5'- gCUGGCGGcgcuGgcGGCGCCGaCCGCCGCg -3'
miRNA:   3'- gGGUCGUC----CuaCCGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14285 0.74 0.178848
Target:  5'- uCCCGccGCGGcGAaaUGGCGUgGCCgGCCGCc -3'
miRNA:   3'- -GGGU--CGUC-CU--ACCGCGgCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 100348 0.74 0.178848
Target:  5'- gCCAGCGGccGcgGGUcguaGCCGCgCGCCGCg -3'
miRNA:   3'- gGGUCGUC--CuaCCG----CGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 45814 0.74 0.178848
Target:  5'- gCCCGGCGGGA--GCuGCCGCCCGggccacUCGCu -3'
miRNA:   3'- -GGGUCGUCCUacCG-CGGCGGGC------GGCG- -5'
6481 5' -64.2 NC_001847.1 + 89968 0.74 0.183171
Target:  5'- gCCAGCGcgcggcGGAagcGGUGCUGCgCGCCGCg -3'
miRNA:   3'- gGGUCGU------CCUa--CCGCGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 105566 0.74 0.183171
Target:  5'- gCCCGGCGcGgcGGCGCCGgcgccggcgccCCCGCCGg -3'
miRNA:   3'- -GGGUCGUcCuaCCGCGGC-----------GGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 28340 0.74 0.183171
Target:  5'- gCCGGCGGGcagcgcGGCcgucauCCGCCCGCUGCu -3'
miRNA:   3'- gGGUCGUCCua----CCGc-----GGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 46741 0.74 0.183171
Target:  5'- cCCUGGUAcccGAcGGCGCgccCGCCCGCCGCg -3'
miRNA:   3'- -GGGUCGUc--CUaCCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 130256 0.74 0.183171
Target:  5'- uCgCAGCGGcGcgGGggcccugcCGCUGCCCGCCGCc -3'
miRNA:   3'- -GgGUCGUC-CuaCC--------GCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 17805 0.74 0.183171
Target:  5'- cCCCAGCGGGcgggagGGCGCCauGCCaguGCgGCg -3'
miRNA:   3'- -GGGUCGUCCua----CCGCGG--CGGg--CGgCG- -5'
6481 5' -64.2 NC_001847.1 + 13938 0.74 0.183171
Target:  5'- gCCgCGGCAGG--GGgGCCGCCCcgcgcaaguGCCGCc -3'
miRNA:   3'- -GG-GUCGUCCuaCCgCGGCGGG---------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 102152 0.74 0.183171
Target:  5'- aCCA-CGGc--GGCGCgGCCCGCCGCa -3'
miRNA:   3'- gGGUcGUCcuaCCGCGgCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2753 0.74 0.183171
Target:  5'- gCCCGGCGcGgcGGCGCCGgcgccggcgccCCCGCCGg -3'
miRNA:   3'- -GGGUCGUcCuaCCGCGGC-----------GGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.