miRNA display CGI


Results 141 - 160 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 105566 0.74 0.183171
Target:  5'- gCCCGGCGcGgcGGCGCCGgcgccggcgccCCCGCCGg -3'
miRNA:   3'- -GGGUCGUcCuaCCGCGGC-----------GGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 46741 0.74 0.183171
Target:  5'- cCCUGGUAcccGAcGGCGCgccCGCCCGCCGCg -3'
miRNA:   3'- -GGGUCGUc--CUaCCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 104089 0.73 0.187585
Target:  5'- cCCCAGCGGuuggcggcgcGGUGGCugGCCGCCuCGCCc- -3'
miRNA:   3'- -GGGUCGUC----------CUACCG--CGGCGG-GCGGcg -5'
6481 5' -64.2 NC_001847.1 + 113404 0.73 0.187585
Target:  5'- cCCCGcgcgcGCGGGccGGCGCCgGCCCG-CGCc -3'
miRNA:   3'- -GGGU-----CGUCCuaCCGCGG-CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 1276 0.73 0.187585
Target:  5'- cCCCAGCGGuuggcggcgcGGUGGCugGCCGCCuCGCCc- -3'
miRNA:   3'- -GGGUCGUC----------CUACCG--CGGCGG-GCGGcg -5'
6481 5' -64.2 NC_001847.1 + 27965 0.73 0.187585
Target:  5'- gCCCAGCucGcuagacuucGUGGCGCCGCgCUggGCCGCg -3'
miRNA:   3'- -GGGUCGucC---------UACCGCGGCG-GG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 28311 0.73 0.187585
Target:  5'- gCCCcGCgagAGGcgGGCGCCggGCCCGgCGCc -3'
miRNA:   3'- -GGGuCG---UCCuaCCGCGG--CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 131124 0.73 0.187585
Target:  5'- gCCCcGCgagAGGcgGGCGCCggGCCCGgCGCc -3'
miRNA:   3'- -GGGuCG---UCCuaCCGCGG--CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 10591 0.73 0.187585
Target:  5'- cCCCGcgcgcGCGGGccGGCGCCgGCCCG-CGCc -3'
miRNA:   3'- -GGGU-----CGUCCuaCCGCGG-CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 94153 0.73 0.187585
Target:  5'- gCCggAGCAGG-UGaGCGCgGCCCGgCGCa -3'
miRNA:   3'- gGG--UCGUCCuAC-CGCGgCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 62597 0.73 0.192093
Target:  5'- gCCCcGCGGcGAUcGCcCCGCUCGCCGCg -3'
miRNA:   3'- -GGGuCGUC-CUAcCGcGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31824 0.73 0.192093
Target:  5'- uCCgCGGaCAGGggGGUuggcgcgcgGCCGcCCCGCCGCc -3'
miRNA:   3'- -GG-GUC-GUCCuaCCG---------CGGC-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 41335 0.73 0.192093
Target:  5'- gUCCAGCGGGGacucGGcCGCCG-CgGCCGCg -3'
miRNA:   3'- -GGGUCGUCCUa---CC-GCGGCgGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 134637 0.73 0.192093
Target:  5'- uCCgCGGaCAGGggGGUuggcgcgcgGCCGcCCCGCCGCc -3'
miRNA:   3'- -GG-GUC-GUCCuaCCG---------CGGC-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 42709 0.73 0.192093
Target:  5'- uCCCAGCccGGAuuUGGCGCgGCgggCgGCCGCg -3'
miRNA:   3'- -GGGUCGu-CCU--ACCGCGgCG---GgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 48643 0.73 0.196696
Target:  5'- -gCGGCGGGgcGcCGCCGCCC-CCGCa -3'
miRNA:   3'- ggGUCGUCCuaCcGCGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 57205 0.73 0.196696
Target:  5'- gCCCGGCGGcGuuuGCuacaGCCGCCCGCCGg -3'
miRNA:   3'- -GGGUCGUC-CuacCG----CGGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 121789 0.73 0.196696
Target:  5'- uCgCGGCuGGAgcguccucgcgGGCGCCuGCUCGCCGCc -3'
miRNA:   3'- -GgGUCGuCCUa----------CCGCGG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 80545 0.73 0.196696
Target:  5'- aUCGGCGcGGgcGcGCGCCGCCagCGCCGCc -3'
miRNA:   3'- gGGUCGU-CCuaC-CGCGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 43534 0.73 0.196696
Target:  5'- gCCgCAGCcgcgAGGAgaaGCGCCGCCgcgagCGCCGCg -3'
miRNA:   3'- -GG-GUCG----UCCUac-CGCGGCGG-----GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.