miRNA display CGI


Results 101 - 120 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 87844 0.66 0.521371
Target:  5'- gCCGGCGGGcgugAUGGCccgcgggccugugGUCGCUgugGCCGCg -3'
miRNA:   3'- gGGUCGUCC----UACCG-------------CGGCGGg--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 9521 0.66 0.516718
Target:  5'- gCCgAGCGGGcgGcGCGCuagcguccgugcgugCGCCagCGCUGCa -3'
miRNA:   3'- -GGgUCGUCCuaC-CGCG---------------GCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 124066 0.66 0.516718
Target:  5'- -aCAGCacGGGGUGGaacaggcaggugaacUGCCGCC-GCUGCg -3'
miRNA:   3'- ggGUCG--UCCUACC---------------GCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 118264 0.66 0.513935
Target:  5'- aCgCAGCGGuGGUGGUGaugucucuccaggaGCCCGCuCGCc -3'
miRNA:   3'- -GgGUCGUC-CUACCGCgg------------CGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 43003 0.66 0.513008
Target:  5'- gCCGcCGGGggGGCG-CGCCgGgCCGCc -3'
miRNA:   3'- gGGUcGUCCuaCCGCgGCGGgC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 95953 0.66 0.513008
Target:  5'- gCUGGCGGGcgagcGUGaGCGCagcaGCCgcUGCCGCg -3'
miRNA:   3'- gGGUCGUCC-----UAC-CGCGg---CGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 62550 0.66 0.513008
Target:  5'- gCCAGCAGcGcguuuUGGC-CCaGCCCGCgcauCGCg -3'
miRNA:   3'- gGGUCGUC-Cu----ACCGcGG-CGGGCG----GCG- -5'
6481 5' -64.2 NC_001847.1 + 59724 0.66 0.513008
Target:  5'- gCCuGCAGGuacguGUGGCccGCgaUGCCCGCCucGCg -3'
miRNA:   3'- gGGuCGUCC-----UACCG--CG--GCGGGCGG--CG- -5'
6481 5' -64.2 NC_001847.1 + 119511 0.66 0.513008
Target:  5'- gCCCgAGCccGGAggGGCGgCGgCCGCgGCc -3'
miRNA:   3'- -GGG-UCGu-CCUa-CCGCgGCgGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 84539 0.66 0.513008
Target:  5'- gCCCGGC--GAaGGCGCC-CgCGUCGCa -3'
miRNA:   3'- -GGGUCGucCUaCCGCGGcGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 86335 0.66 0.513008
Target:  5'- gCCCGGaCAuccccGAUGGCGCCGgCgaggCGcCCGCa -3'
miRNA:   3'- -GGGUC-GUc----CUACCGCGGCgG----GC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 97642 0.66 0.513008
Target:  5'- aCgCAGuCGGGGuuUGG-GCCcagaCCCGCCGCu -3'
miRNA:   3'- -GgGUC-GUCCU--ACCgCGGc---GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 123994 0.66 0.513008
Target:  5'- gCCGGUAGuuUaGcCGCCGCagcuCCGCCGCg -3'
miRNA:   3'- gGGUCGUCcuAcC-GCGGCG----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 60687 0.66 0.513008
Target:  5'- cCCCGcucguacuGCAGcGccacGGCGUCGUgCGCCGCc -3'
miRNA:   3'- -GGGU--------CGUC-Cua--CCGCGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 122179 0.66 0.512082
Target:  5'- aCCAGCGaccgGGC-CCacccccgGCCCGCCGCc -3'
miRNA:   3'- gGGUCGUccuaCCGcGG-------CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 69312 0.66 0.510233
Target:  5'- aCCGGCugccuuuugggcgcGGGccucgGGCGCUGCUgGCgGCg -3'
miRNA:   3'- gGGUCG--------------UCCua---CCGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 130124 0.66 0.507464
Target:  5'- gCCCgAGCuuccccuccGCGCCGCcgCCGCCGCg -3'
miRNA:   3'- -GGG-UCGuccuac---CGCGGCG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120459 0.66 0.507464
Target:  5'- gCCuGCuccaucgccGCGCCGCCgGCCGCg -3'
miRNA:   3'- gGGuCGuccuac---CGCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 70931 0.66 0.507464
Target:  5'- cUCUAGCgcgaacugacgcgccAGGGUcgccaGCGUcgCGCCCGCCGCc -3'
miRNA:   3'- -GGGUCG---------------UCCUAc----CGCG--GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 115299 0.66 0.507464
Target:  5'- cCCCGggcGCGGGccaagGGCGCUGugucgacaaaagccaCcCCGCCGCu -3'
miRNA:   3'- -GGGU---CGUCCua---CCGCGGC---------------G-GGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.