miRNA display CGI


Results 121 - 140 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 120459 0.66 0.507464
Target:  5'- gCCuGCuccaucgccGCGCCGCCgGCCGCg -3'
miRNA:   3'- gGGuCGuccuac---CGCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 113021 0.66 0.503782
Target:  5'- gCCGcCGGGcccagGGCG-CGCCCGCUGUc -3'
miRNA:   3'- gGGUcGUCCua---CCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 118669 0.66 0.503782
Target:  5'- aCCCAgGCAGGGcgGGgGUUggGCCgGgCCGCa -3'
miRNA:   3'- -GGGU-CGUCCUa-CCgCGG--CGGgC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 10208 0.66 0.503782
Target:  5'- gCCGcCGGGcccagGGCG-CGCCCGCUGUc -3'
miRNA:   3'- gGGUcGUCCua---CCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 108368 0.66 0.503782
Target:  5'- ---cGCAGGAgGGCGCgCGCaCUgaccagGCCGCg -3'
miRNA:   3'- ggguCGUCCUaCCGCG-GCG-GG------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14804 0.66 0.503782
Target:  5'- aCCgCAGCGgcGGAgcUGcGCGgCGCCCuGCgCGCg -3'
miRNA:   3'- -GG-GUCGU--CCU--AC-CGCgGCGGG-CG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 56054 0.66 0.503782
Target:  5'- cCCCu--GGGA-GGCGCCGCUgaaGCCuGCg -3'
miRNA:   3'- -GGGucgUCCUaCCGCGGCGGg--CGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 55109 0.66 0.503782
Target:  5'- -gCGGCGGcGAUGaCGCCGaCCCcccCCGCg -3'
miRNA:   3'- ggGUCGUC-CUACcGCGGC-GGGc--GGCG- -5'
6481 5' -64.2 NC_001847.1 + 13709 0.66 0.503782
Target:  5'- aCCCGGCGGcGGUcGG-GCCGCUCaacggcuCCGCc -3'
miRNA:   3'- -GGGUCGUC-CUA-CCgCGGCGGGc------GGCG- -5'
6481 5' -64.2 NC_001847.1 + 92155 0.66 0.503782
Target:  5'- cCCCGGCGGcGuucccGGCGuuGUugccgggaacgCCGCCGUc -3'
miRNA:   3'- -GGGUCGUC-Cua---CCGCggCG-----------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 122531 0.66 0.503782
Target:  5'- cUCCAuGUugAGGAgcgggGGCccuuccgacaGCCGCUCGUCGCg -3'
miRNA:   3'- -GGGU-CG--UCCUa----CCG----------CGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120800 0.66 0.503782
Target:  5'- gUCGGCAGca-GGCaccccuucuCUGCCCGCCGCu -3'
miRNA:   3'- gGGUCGUCcuaCCGc--------GGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 40968 0.66 0.503782
Target:  5'- gCCCGcGCgAGGcgGccGCGCCcaGCagCCGCCGCg -3'
miRNA:   3'- -GGGU-CG-UCCuaC--CGCGG--CG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 93833 0.66 0.503782
Target:  5'- aCCGGCcGGc-GGCGCCGgaaaCGUCGCg -3'
miRNA:   3'- gGGUCGuCCuaCCGCGGCgg--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 72617 0.66 0.503782
Target:  5'- gCC-GCAcGGcacGUGCCGCCCguGCCGCa -3'
miRNA:   3'- gGGuCGU-CCuacCGCGGCGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 31156 0.66 0.503782
Target:  5'- gCCUucGCGGGc-GGCGUCGa-CGCCGCg -3'
miRNA:   3'- -GGGu-CGUCCuaCCGCGGCggGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 99464 0.66 0.501028
Target:  5'- gCCAGCAGca--GCGCCGCUUgcgucacgacgucgGCCGCc -3'
miRNA:   3'- gGGUCGUCcuacCGCGGCGGG--------------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 51965 0.66 0.501028
Target:  5'- cCCgCGGCAGuGAUgcacugggugcgccGGCGCaucgcggacgCGCCCgacGCCGCg -3'
miRNA:   3'- -GG-GUCGUC-CUA--------------CCGCG----------GCGGG---CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 2951 0.66 0.499196
Target:  5'- cUCCAGCGcGGcgGccgccucggcgcgcaGCGCCGCCggggccggcgcuggaGCCGCg -3'
miRNA:   3'- -GGGUCGU-CCuaC---------------CGCGGCGGg--------------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 60148 0.66 0.494629
Target:  5'- gCCGaagaacGCGGGGU-GCGCCacGCCCGCgaGCg -3'
miRNA:   3'- gGGU------CGUCCUAcCGCGG--CGGGCGg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.