miRNA display CGI


Results 101 - 120 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 14339 0.71 0.259751
Target:  5'- gCCgGGCGuGGUGGCGgCGCCugcggggaaCGCCGCc -3'
miRNA:   3'- -GGgUCGUcCUACCGCgGCGG---------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14422 0.69 0.345635
Target:  5'- uCUguGCGGGGcuccgcuguuUGGCGCCGagcgcgCgGCCGCg -3'
miRNA:   3'- -GGguCGUCCU----------ACCGCGGCg-----GgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14637 0.69 0.353026
Target:  5'- aCCgCGGCGcucgcGCGCCGCUCGCUGCg -3'
miRNA:   3'- -GG-GUCGUccuacCGCGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14688 0.67 0.441431
Target:  5'- --aGGCAGGAgcgaaaGGCGUCGUUCGCgaCGCg -3'
miRNA:   3'- gggUCGUCCUa-----CCGCGGCGGGCG--GCG- -5'
6481 5' -64.2 NC_001847.1 + 14804 0.66 0.503782
Target:  5'- aCCgCAGCGgcGGAgcUGcGCGgCGCCCuGCgCGCg -3'
miRNA:   3'- -GG-GUCGU--CCU--AC-CGCgGCGGG-CG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 14812 0.67 0.471196
Target:  5'- gCCCGGcCGGGAgcUGGUguuccaggaaaaucaGCCGgCC-CCGCa -3'
miRNA:   3'- -GGGUC-GUCCU--ACCG---------------CGGCgGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14874 0.68 0.421075
Target:  5'- gUCGGguGGAcagcgaacgcuacGGgGCCGUCCGCgCGCa -3'
miRNA:   3'- gGGUCguCCUa------------CCgCGGCGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 14907 0.67 0.450077
Target:  5'- gCCuGCAGGAaauuuUGGCGUa---CGCCGCg -3'
miRNA:   3'- gGGuCGUCCU-----ACCGCGgcggGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14940 0.66 0.531663
Target:  5'- --aGGCuGcGAgcgGGCGCCGCUCG-CGCg -3'
miRNA:   3'- gggUCGuC-CUa--CCGCGGCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 15008 0.71 0.290549
Target:  5'- cCUCGGCcGcGGUGGgGCCGCgCgaGCCGCg -3'
miRNA:   3'- -GGGUCGuC-CUACCgCGGCG-Gg-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 15243 0.66 0.493717
Target:  5'- gCCGGCGGcGgcGGCGgccacgcacgcgaUCGCCgcaGCCGCa -3'
miRNA:   3'- gGGUCGUC-CuaCCGC-------------GGCGGg--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 15522 0.74 0.183171
Target:  5'- gCUCGGCGGGAgccgcgggcugcUGGCGCCGgUgCGCgCGCg -3'
miRNA:   3'- -GGGUCGUCCU------------ACCGCGGC-GgGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 15615 0.67 0.450077
Target:  5'- gCCCAGCcuGccGGcCGCgG-CCGCCGCc -3'
miRNA:   3'- -GGGUCGucCuaCC-GCGgCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 15915 0.74 0.166421
Target:  5'- uCCCAGCucgucguccguGGGGUaGGCGaaGCCCGCCa- -3'
miRNA:   3'- -GGGUCG-----------UCCUA-CCGCggCGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 16342 0.69 0.353026
Target:  5'- aCCGGCAcggccuGGAggcgcUGGCgGCUGCCggUGCCGCu -3'
miRNA:   3'- gGGUCGU------CCU-----ACCG-CGGCGG--GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 16454 0.66 0.531663
Target:  5'- aCCCAGCcGG--GGCuGCgGCCCGgcccaacccCCGCc -3'
miRNA:   3'- -GGGUCGuCCuaCCG-CGgCGGGC---------GGCG- -5'
6481 5' -64.2 NC_001847.1 + 16710 0.78 0.092013
Target:  5'- aCCAGCAGGAgccccacGGCGCCGagaCCGCagGCg -3'
miRNA:   3'- gGGUCGUCCUa------CCGCGGCg--GGCGg-CG- -5'
6481 5' -64.2 NC_001847.1 + 17278 0.68 0.432881
Target:  5'- gCCCAGUcgccGGUGGCGUCGUCCuCUGUc -3'
miRNA:   3'- -GGGUCGuc--CUACCGCGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 17670 0.66 0.541082
Target:  5'- aCCAGagcucCAGGcgcgcaccgccaGUGGCGUUgucgGCCaCGCCGCa -3'
miRNA:   3'- gGGUC-----GUCC------------UACCGCGG----CGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 17803 0.72 0.22637
Target:  5'- gCUCGGCcgcGGggGGCgagGCCGCCCcccGCCGCu -3'
miRNA:   3'- -GGGUCGu--CCuaCCG---CGGCGGG---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.