miRNA display CGI


Results 121 - 140 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 17805 0.74 0.183171
Target:  5'- cCCCAGCGGGcgggagGGCGCCauGCCaguGCgGCg -3'
miRNA:   3'- -GGGUCGUCCua----CCGCGG--CGGg--CGgCG- -5'
6481 5' -64.2 NC_001847.1 + 18177 0.69 0.360528
Target:  5'- cCCCAGCGGGcccAUGGCGgaCGCgCGgCGa -3'
miRNA:   3'- -GGGUCGUCC---UACCGCg-GCGgGCgGCg -5'
6481 5' -64.2 NC_001847.1 + 18419 0.67 0.458814
Target:  5'- gCguGCAGGGccuUGGC-CaCGUgCGCCGCg -3'
miRNA:   3'- gGguCGUCCU---ACCGcG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 18521 0.71 0.253921
Target:  5'- gCCAGCGcugcGGGc-GCGCCGCCguccgCGCCGCa -3'
miRNA:   3'- gGGUCGU----CCUacCGCGGCGG-----GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 18729 0.67 0.476554
Target:  5'- gCCCaAGCgcgcggcccGGGGcccaGaGCGCCG-CCGCCGCg -3'
miRNA:   3'- -GGG-UCG---------UCCUa---C-CGCGGCgGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 18815 0.66 0.549607
Target:  5'- gCCAGCGcgcgcauGGGcacGGCGUccucgCGCgCGCCGCa -3'
miRNA:   3'- gGGUCGU-------CCUa--CCGCG-----GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 18859 0.68 0.416075
Target:  5'- gUCAGCGGGGca-CGCUGCCuCGCCGa -3'
miRNA:   3'- gGGUCGUCCUaccGCGGCGG-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 18973 0.7 0.317193
Target:  5'- aCCAGCGcGGcc-GCGgCGCCCGCgGCc -3'
miRNA:   3'- gGGUCGU-CCuacCGCgGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 19041 0.7 0.301653
Target:  5'- gCCGGCAGGcccGGCGUCGUcaucgucgucccagUCGCCGUc -3'
miRNA:   3'- gGGUCGUCCua-CCGCGGCG--------------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 19426 0.71 0.284168
Target:  5'- --aAGCGGGAgcgccaaaGGcCGCgCGCCCGCUGCc -3'
miRNA:   3'- gggUCGUCCUa-------CC-GCG-GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 19856 0.68 0.407823
Target:  5'- gCCCGcGCccGggGGCGCCggcuuaGCCCGCCa- -3'
miRNA:   3'- -GGGU-CGucCuaCCGCGG------CGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 20196 0.7 0.297041
Target:  5'- aCC-GCGGGgcGGCGCCccgcCCCGCCa- -3'
miRNA:   3'- gGGuCGUCCuaCCGCGGc---GGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 20271 0.68 0.432881
Target:  5'- -aCGGCgAGGucGGCGCCGCgCGUCGg -3'
miRNA:   3'- ggGUCG-UCCuaCCGCGGCGgGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 20660 0.7 0.317193
Target:  5'- gCUCAGCAGGgcGGagaCGUCCGCCaGCu -3'
miRNA:   3'- -GGGUCGUCCuaCCgcgGCGGGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 21196 0.72 0.242583
Target:  5'- gCCCGGCGGcGUaGGagaCGCCGCCgCGaCCGCg -3'
miRNA:   3'- -GGGUCGUCcUA-CC---GCGGCGG-GC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 21338 0.66 0.540137
Target:  5'- gCCAuuguggcGCAGacGAUGcGCGCCGUCgGCgGCu -3'
miRNA:   3'- gGGU-------CGUC--CUAC-CGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 21674 0.69 0.383692
Target:  5'- cCCCGGCgacGGGuAUGGCGaggaGCCCGgCGa -3'
miRNA:   3'- -GGGUCG---UCC-UACCGCgg--CGGGCgGCg -5'
6481 5' -64.2 NC_001847.1 + 21724 0.83 0.042739
Target:  5'- gCCAGCAGGGcgcgggccGGCGCCgGCCCGCgCGCg -3'
miRNA:   3'- gGGUCGUCCUa-------CCGCGG-CGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 21770 0.68 0.399674
Target:  5'- gCCGGCGccGGGcccGGCGCCgGCCgGgCGCg -3'
miRNA:   3'- gGGUCGU--CCUa--CCGCGG-CGGgCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 21859 0.66 0.550556
Target:  5'- -gCAGCAGGuggugcgggGGCuGCgGCgCGCUGCc -3'
miRNA:   3'- ggGUCGUCCua-------CCG-CGgCGgGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.