miRNA display CGI


Results 101 - 120 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 122093 0.67 0.467641
Target:  5'- gCCGGCgacgAGGAgacgcaguUGGCGCUGa-CGCUGCa -3'
miRNA:   3'- gGGUCG----UCCU--------ACCGCGGCggGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 122011 0.84 0.036588
Target:  5'- gCCgCGGCAGGcggcgcGGCGCCGCCCGCgCGCc -3'
miRNA:   3'- -GG-GUCGUCCua----CCGCGGCGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 121821 0.66 0.522303
Target:  5'- gCCAGCAGGuacagcucGGCcgacuGCaGCCCGgCGCc -3'
miRNA:   3'- gGGUCGUCCua------CCG-----CGgCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 121789 0.73 0.196696
Target:  5'- uCgCGGCuGGAgcguccucgcgGGCGCCuGCUCGCCGCc -3'
miRNA:   3'- -GgGUCGuCCUa----------CCGCGG-CGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 121688 0.67 0.476554
Target:  5'- gCCCgAGCAGGu--GCG-CGCCCGCUa- -3'
miRNA:   3'- -GGG-UCGUCCuacCGCgGCGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 121611 0.72 0.221173
Target:  5'- cCCCGGCGGcGGUuGCuGCCGCugcugCUGCCGCa -3'
miRNA:   3'- -GGGUCGUC-CUAcCG-CGGCG-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 121416 0.68 0.424428
Target:  5'- cCCCAcGCccAGGAaGGcCGCUGUcauCUGCCGCa -3'
miRNA:   3'- -GGGU-CG--UCCUaCC-GCGGCG---GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 121201 0.66 0.522303
Target:  5'- aCUugcGCGGGgcGGCcCC-CCUGCCGCg -3'
miRNA:   3'- gGGu--CGUCCuaCCGcGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 121176 0.69 0.383692
Target:  5'- gCCGGcCAGGGgcgGGC-UCGCCacggGCCGCa -3'
miRNA:   3'- gGGUC-GUCCUa--CCGcGGCGGg---CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120935 0.67 0.485551
Target:  5'- cCCCGGCcGGccUGacCGCCaGcCCCGCCGCc -3'
miRNA:   3'- -GGGUCGuCCu-ACc-GCGG-C-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120839 0.71 0.265691
Target:  5'- -gCAGCGGGAgcGGgGCCGCgaCGCCGg -3'
miRNA:   3'- ggGUCGUCCUa-CCgCGGCGg-GCGGCg -5'
6481 5' -64.2 NC_001847.1 + 120800 0.66 0.503782
Target:  5'- gUCGGCAGca-GGCaccccuucuCUGCCCGCCGCu -3'
miRNA:   3'- gGGUCGUCcuaCCGc--------GGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120496 0.67 0.458814
Target:  5'- cCCCGcucGCAGcGAgcGGCGCgCGagCGCCGCg -3'
miRNA:   3'- -GGGU---CGUC-CUa-CCGCG-GCggGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120459 0.66 0.507464
Target:  5'- gCCuGCuccaucgccGCGCCGCCgGCCGCg -3'
miRNA:   3'- gGGuCGuccuac---CGCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120327 0.69 0.383692
Target:  5'- aCCGcgcGCAGG---GCGCCGCgcagcuCCGCCGCu -3'
miRNA:   3'- gGGU---CGUCCuacCGCGGCG------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120267 0.7 0.297041
Target:  5'- uCCguGuCGGGGcuuucgaccaUGGgGUCGCCCGgCCGCa -3'
miRNA:   3'- -GGguC-GUCCU----------ACCgCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 120174 0.7 0.317193
Target:  5'- gCCuguuGCucuGGAUGGUGgUGCUgGCCGCg -3'
miRNA:   3'- gGGu---CGu--CCUACCGCgGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120092 0.7 0.331189
Target:  5'- gCCGGUcaGAUGGCGCucgcacagcuCGCCCggcgGCCGCg -3'
miRNA:   3'- gGGUCGucCUACCGCG----------GCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120024 0.66 0.541082
Target:  5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3'
miRNA:   3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 119832 0.68 0.424428
Target:  5'- aUCAuGUAcGGGUcGCGCaCGCCCGCgCGCa -3'
miRNA:   3'- gGGU-CGU-CCUAcCGCG-GCGGGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.