miRNA display CGI


Results 81 - 100 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 32132 0.75 0.158571
Target:  5'- gCCGGCGcug-GGCGCCGCCgCGcCCGCg -3'
miRNA:   3'- gGGUCGUccuaCCGCGGCGG-GC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 44297 0.75 0.158571
Target:  5'- cCCCGGCcccggGGCGCCGCUCGCUGa -3'
miRNA:   3'- -GGGUCGuccuaCCGCGGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 65428 0.74 0.162453
Target:  5'- cUCCGGgAGGc-GGCaGCCGCgCGCCGCg -3'
miRNA:   3'- -GGGUCgUCCuaCCG-CGGCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 114942 0.74 0.162453
Target:  5'- gUuuGGCGGGGcggGGCGCCGcCCCGCgGUc -3'
miRNA:   3'- -GggUCGUCCUa--CCGCGGC-GGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 103787 0.74 0.162453
Target:  5'- aCCCGGCcGGcgGGgcuucCGCCGCCgGCgGCg -3'
miRNA:   3'- -GGGUCGuCCuaCC-----GCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 9653 0.74 0.166421
Target:  5'- cUCgAGCAGccgGGCGUccucgCGCCCGCCGCg -3'
miRNA:   3'- -GGgUCGUCcuaCCGCG-----GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 39352 0.74 0.166421
Target:  5'- aCCAGUA-GAUGcgcccGCGCCGCCCcCCGCg -3'
miRNA:   3'- gGGUCGUcCUAC-----CGCGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 34528 0.75 0.143869
Target:  5'- gCCGGC--GAU-GCGCCGCCCGCCGg -3'
miRNA:   3'- gGGUCGucCUAcCGCGGCGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 100844 0.75 0.140393
Target:  5'- cUCCGGcCAGGGccgGaGCGCCgGCCCGCCGg -3'
miRNA:   3'- -GGGUC-GUCCUa--C-CGCGG-CGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 59496 0.75 0.140393
Target:  5'- gCCGGCAGGggGuGCGCCGag-GCCGCa -3'
miRNA:   3'- gGGUCGUCCuaC-CGCGGCgggCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132177 0.77 0.115248
Target:  5'- cCCCGGCGGcGcUGcGCGCCGaggcggCCGCCGCg -3'
miRNA:   3'- -GGGUCGUC-CuAC-CGCGGCg-----GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 33875 0.76 0.12111
Target:  5'- uUCUuGCAGGA-GGCGCCGCCgcgcgugGCCGCg -3'
miRNA:   3'- -GGGuCGUCCUaCCGCGGCGGg------CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 87410 0.76 0.12111
Target:  5'- ---cGCGGGcggGGCcCCGCCCGCCGCg -3'
miRNA:   3'- ggguCGUCCua-CCGcGGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 77015 0.76 0.124143
Target:  5'- aCCAGgAGGuccUGGCGCucaucCGCCgCGCCGCa -3'
miRNA:   3'- gGGUCgUCCu--ACCGCG-----GCGG-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 47546 0.76 0.127247
Target:  5'- cUCCAGCAcGGcgGGCGCggggaGCCCggcgGCCGCg -3'
miRNA:   3'- -GGGUCGU-CCuaCCGCGg----CGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 66201 0.76 0.133672
Target:  5'- gCCUGGCuGGA-GGCGCaGCCCGCgGCc -3'
miRNA:   3'- -GGGUCGuCCUaCCGCGgCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 28076 0.76 0.133672
Target:  5'- gCCCGGUcuGGugcuGUGGCGCCuGCCCgggGCCGCg -3'
miRNA:   3'- -GGGUCGu-CC----UACCGCGG-CGGG---CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 116121 0.76 0.13599
Target:  5'- gCCGGCGGGgucacgcgcgaagaGgccgagGGCGCCGCCCGUgCGCu -3'
miRNA:   3'- gGGUCGUCC--------------Ua-----CCGCGGCGGGCG-GCG- -5'
6481 5' -64.2 NC_001847.1 + 131330 0.76 0.136995
Target:  5'- gCCCGGCAGcGcgccGcCGCCGCCCGgCCGCg -3'
miRNA:   3'- -GGGUCGUC-Cuac-C-GCGGCGGGC-GGCG- -5'
6481 5' -64.2 NC_001847.1 + 106071 0.74 0.166421
Target:  5'- -gCGGCAGGGgcgccGGCGCCGCgCgGCCGg -3'
miRNA:   3'- ggGUCGUCCUa----CCGCGGCG-GgCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.