Results 121 - 140 of 969 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 89968 | 0.74 | 0.183171 |
Target: 5'- gCCAGCGcgcggcGGAagcGGUGCUGCgCGCCGCg -3' miRNA: 3'- gGGUCGU------CCUa--CCGCGGCGgGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 105566 | 0.74 | 0.183171 |
Target: 5'- gCCCGGCGcGgcGGCGCCGgcgccggcgccCCCGCCGg -3' miRNA: 3'- -GGGUCGUcCuaCCGCGGC-----------GGGCGGCg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 39616 | 0.74 | 0.170066 |
Target: 5'- cCCCAGCcccAGGGgcaagccUGGCG-CGCCCGCCa- -3' miRNA: 3'- -GGGUCG---UCCU-------ACCGCgGCGGGCGGcg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 41127 | 0.74 | 0.170066 |
Target: 5'- uCCCGGCAGGcgcggacAUGGCGUCGUCgaaCCGCg -3' miRNA: 3'- -GGGUCGUCC-------UACCGCGGCGGgc-GGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 115705 | 0.74 | 0.166421 |
Target: 5'- gCCCGGCAGcGGgcgcgcggccuuUGGCGCUcccgcuuuGCCUGCUGCg -3' miRNA: 3'- -GGGUCGUC-CU------------ACCGCGG--------CGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 100844 | 0.75 | 0.140393 |
Target: 5'- cUCCGGcCAGGGccgGaGCGCCgGCCCGCCGg -3' miRNA: 3'- -GGGUC-GUCCUa--C-CGCGG-CGGGCGGCg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 34528 | 0.75 | 0.143869 |
Target: 5'- gCCGGC--GAU-GCGCCGCCCGCCGg -3' miRNA: 3'- gGGUCGucCUAcCGCGGCGGGCGGCg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 49910 | 0.75 | 0.143869 |
Target: 5'- gCCCGGCcGcGGUGGCGCUGCgCGUgCGCa -3' miRNA: 3'- -GGGUCGuC-CUACCGCGGCGgGCG-GCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 133194 | 0.75 | 0.154773 |
Target: 5'- gCCCGGCgAGGAcgagcgccGGCggcccgagugGCCGCCgCGCCGCg -3' miRNA: 3'- -GGGUCG-UCCUa-------CCG----------CGGCGG-GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 81820 | 0.75 | 0.158188 |
Target: 5'- -gCGGCGGGGc-GCGCCgucugucGCCCGCCGCa -3' miRNA: 3'- ggGUCGUCCUacCGCGG-------CGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 32132 | 0.75 | 0.158571 |
Target: 5'- gCCGGCGcug-GGCGCCGCCgCGcCCGCg -3' miRNA: 3'- gGGUCGUccuaCCGCGGCGG-GC-GGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 44297 | 0.75 | 0.158571 |
Target: 5'- cCCCGGCcccggGGCGCCGCUCGCUGa -3' miRNA: 3'- -GGGUCGuccuaCCGCGGCGGGCGGCg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 27965 | 0.73 | 0.187585 |
Target: 5'- gCCCAGCucGcuagacuucGUGGCGCCGCgCUggGCCGCg -3' miRNA: 3'- -GGGUCGucC---------UACCGCGGCG-GG--CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 65428 | 0.74 | 0.162453 |
Target: 5'- cUCCGGgAGGc-GGCaGCCGCgCGCCGCg -3' miRNA: 3'- -GGGUCgUCCuaCCG-CGGCGgGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 114942 | 0.74 | 0.162453 |
Target: 5'- gUuuGGCGGGGcggGGCGCCGcCCCGCgGUc -3' miRNA: 3'- -GggUCGUCCUa--CCGCGGC-GGGCGgCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 103787 | 0.74 | 0.162453 |
Target: 5'- aCCCGGCcGGcgGGgcuucCGCCGCCgGCgGCg -3' miRNA: 3'- -GGGUCGuCCuaCC-----GCGGCGGgCGgCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 9653 | 0.74 | 0.166421 |
Target: 5'- cUCgAGCAGccgGGCGUccucgCGCCCGCCGCg -3' miRNA: 3'- -GGgUCGUCcuaCCGCG-----GCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 39352 | 0.74 | 0.166421 |
Target: 5'- aCCAGUA-GAUGcgcccGCGCCGCCCcCCGCg -3' miRNA: 3'- gGGUCGUcCUAC-----CGCGGCGGGcGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 106071 | 0.74 | 0.166421 |
Target: 5'- -gCGGCAGGGgcgccGGCGCCGCgCgGCCGg -3' miRNA: 3'- ggGUCGUCCUa----CCGCGGCG-GgCGGCg -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 134237 | 0.74 | 0.166421 |
Target: 5'- gCCGGCGGGc-GGCgGCCGgCgGCCGCg -3' miRNA: 3'- gGGUCGUCCuaCCG-CGGCgGgCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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