Results 81 - 100 of 969 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 103711 | 0.66 | 0.522303 |
Target: 5'- aCCAGCGcca--GCGaCGUCCGCCGCg -3' miRNA: 3'- gGGUCGUccuacCGCgGCGGGCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 124066 | 0.66 | 0.516718 |
Target: 5'- -aCAGCacGGGGUGGaacaggcaggugaacUGCCGCC-GCUGCg -3' miRNA: 3'- ggGUCG--UCCUACC---------------GCGGCGGgCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 84539 | 0.66 | 0.513008 |
Target: 5'- gCCCGGC--GAaGGCGCC-CgCGUCGCa -3' miRNA: 3'- -GGGUCGucCUaCCGCGGcGgGCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 120459 | 0.66 | 0.507464 |
Target: 5'- gCCuGCuccaucgccGCGCCGCCgGCCGCg -3' miRNA: 3'- gGGuCGuccuac---CGCGGCGGgCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 10208 | 0.66 | 0.503782 |
Target: 5'- gCCGcCGGGcccagGGCG-CGCCCGCUGUc -3' miRNA: 3'- gGGUcGUCCua---CCGCgGCGGGCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 120800 | 0.66 | 0.503782 |
Target: 5'- gUCGGCAGca-GGCaccccuucuCUGCCCGCCGCu -3' miRNA: 3'- gGGUCGUCcuaCCGc--------GGCGGGCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 2951 | 0.66 | 0.499196 |
Target: 5'- cUCCAGCGcGGcgGccgccucggcgcgcaGCGCCGCCggggccggcgcuggaGCCGCg -3' miRNA: 3'- -GGGUCGU-CCuaC---------------CGCGGCGGg--------------CGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 68722 | 0.66 | 0.531663 |
Target: 5'- uCCCuGgAGGGUGuaCGUCaGCCCgcGCCGCg -3' miRNA: 3'- -GGGuCgUCCUACc-GCGG-CGGG--CGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 27853 | 0.66 | 0.531663 |
Target: 5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3' miRNA: 3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 60893 | 0.66 | 0.53825 |
Target: 5'- cCCCAGCAGcGgcGGCagcaggcauaccgcGUC-CCCGuuGCa -3' miRNA: 3'- -GGGUCGUC-CuaCCG--------------CGGcGGGCggCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 64908 | 0.66 | 0.494629 |
Target: 5'- aCCAGCAGcGAcaucGGCGgCGCCUucuccagcaGCaCGCg -3' miRNA: 3'- gGGUCGUC-CUa---CCGCgGCGGG---------CG-GCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 4301 | 0.66 | 0.493717 |
Target: 5'- cCUCGGCuucGAUGGCggcggcuaugacgGCCGCUUcgGCCGCg -3' miRNA: 3'- -GGGUCGuc-CUACCG-------------CGGCGGG--CGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 90327 | 0.67 | 0.485551 |
Target: 5'- gCCGcCGGGGccgggGGCgcaGCCGCCaaaGCCGCc -3' miRNA: 3'- gGGUcGUCCUa----CCG---CGGCGGg--CGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 5834 | 0.67 | 0.485551 |
Target: 5'- gCCCGGCAGGcc--CGCCuugcaccagGCCCGCCc- -3' miRNA: 3'- -GGGUCGUCCuaccGCGG---------CGGGCGGcg -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 4622 | 0.67 | 0.485551 |
Target: 5'- gCUCGGCGcGGgcGGC-CCGCCggCGCuCGCg -3' miRNA: 3'- -GGGUCGU-CCuaCCGcGGCGG--GCG-GCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 28687 | 0.66 | 0.550556 |
Target: 5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3' miRNA: 3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 103199 | 0.66 | 0.550556 |
Target: 5'- gCCgCGGCAGGcucgucCGCUuaCCCGCCGCg -3' miRNA: 3'- -GG-GUCGUCCuacc--GCGGc-GGGCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 118653 | 0.66 | 0.547708 |
Target: 5'- gCCGcgcGCGGGA-GGCGCaagagagguguccgCGCUcugCGCCGCg -3' miRNA: 3'- gGGU---CGUCCUaCCGCG--------------GCGG---GCGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 120024 | 0.66 | 0.541082 |
Target: 5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3' miRNA: 3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5' |
|||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 99553 | 0.66 | 0.541082 |
Target: 5'- gCgCAGCAGGuucuugaGGUugGCCaGCCCGgCGCc -3' miRNA: 3'- -GgGUCGUCCua-----CCG--CGG-CGGGCgGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home