miRNA display CGI


Results 101 - 120 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 125067 0.67 0.485551
Target:  5'- uCCCGcGCGcGGcggGGCGCUggGCCCG-CGCg -3'
miRNA:   3'- -GGGU-CGU-CCua-CCGCGG--CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 122675 0.67 0.484648
Target:  5'- nCCAcGCGGGAa---GCCGCggaggcuCCGCCGCg -3'
miRNA:   3'- gGGU-CGUCCUaccgCGGCG-------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 129018 0.67 0.476554
Target:  5'- cCCCgauGGCGGcGA-GGCGCuCGCgCCGCgccuCGCg -3'
miRNA:   3'- -GGG---UCGUC-CUaCCGCG-GCG-GGCG----GCG- -5'
6481 5' -64.2 NC_001847.1 + 121688 0.67 0.476554
Target:  5'- gCCCgAGCAGGu--GCG-CGCCCGCUa- -3'
miRNA:   3'- -GGG-UCGUCCuacCGCgGCGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 126126 0.67 0.476554
Target:  5'- gUCUAGCAGGG-GGuCGCgGCCgCGCaCGa -3'
miRNA:   3'- -GGGUCGUCCUaCC-GCGgCGG-GCG-GCg -5'
6481 5' -64.2 NC_001847.1 + 120459 0.66 0.507464
Target:  5'- gCCuGCuccaucgccGCGCCGCCgGCCGCg -3'
miRNA:   3'- gGGuCGuccuac---CGCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 84539 0.66 0.513008
Target:  5'- gCCCGGC--GAaGGCGCC-CgCGUCGCa -3'
miRNA:   3'- -GGGUCGucCUaCCGCGGcGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 28687 0.66 0.550556
Target:  5'- aCgCGGCGcugguGGAccUGGUGUaCGCgCGCCGCg -3'
miRNA:   3'- -GgGUCGU-----CCU--ACCGCG-GCGgGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 103199 0.66 0.550556
Target:  5'- gCCgCGGCAGGcucgucCGCUuaCCCGCCGCg -3'
miRNA:   3'- -GG-GUCGUCCuacc--GCGGc-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 118653 0.66 0.547708
Target:  5'- gCCGcgcGCGGGA-GGCGCaagagagguguccgCGCUcugCGCCGCg -3'
miRNA:   3'- gGGU---CGUCCUaCCGCG--------------GCGG---GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 120024 0.66 0.541082
Target:  5'- gCCAGCaccgccgccgucAGGGccgucagcaUGaGCGCgGCCCcgcuGCCGCa -3'
miRNA:   3'- gGGUCG------------UCCU---------AC-CGCGgCGGG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 99553 0.66 0.541082
Target:  5'- gCgCAGCAGGuucuugaGGUugGCCaGCCCGgCGCc -3'
miRNA:   3'- -GgGUCGUCCua-----CCG--CGG-CGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 60893 0.66 0.53825
Target:  5'- cCCCAGCAGcGgcGGCagcaggcauaccgcGUC-CCCGuuGCa -3'
miRNA:   3'- -GGGUCGUC-CuaCCG--------------CGGcGGGCggCG- -5'
6481 5' -64.2 NC_001847.1 + 27853 0.66 0.531663
Target:  5'- gCCGGCGccagggacgcGGggGGCGCCGaggacgcggaCGUCGCg -3'
miRNA:   3'- gGGUCGU----------CCuaCCGCGGCgg--------GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 68722 0.66 0.531663
Target:  5'- uCCCuGgAGGGUGuaCGUCaGCCCgcGCCGCg -3'
miRNA:   3'- -GGGuCgUCCUACc-GCGG-CGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 100517 0.66 0.530724
Target:  5'- cCUCGGCGcgcaGGCGCCggacuuccucggcGCgCCGCCGCg -3'
miRNA:   3'- -GGGUCGUccuaCCGCGG-------------CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53179 0.66 0.522303
Target:  5'- gCCC-GCGuGAUGaGCG-CGCCCGCgGUg -3'
miRNA:   3'- -GGGuCGUcCUAC-CGCgGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 67918 0.66 0.522303
Target:  5'- -aCAGCucac-GGCGUucgaccgcgCGCCCGCCGCu -3'
miRNA:   3'- ggGUCGuccuaCCGCG---------GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 103711 0.66 0.522303
Target:  5'- aCCAGCGcca--GCGaCGUCCGCCGCg -3'
miRNA:   3'- gGGUCGUccuacCGCgGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 124066 0.66 0.516718
Target:  5'- -aCAGCacGGGGUGGaacaggcaggugaacUGCCGCC-GCUGCg -3'
miRNA:   3'- ggGUCG--UCCUACC---------------GCGGCGGgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.