miRNA display CGI


Results 121 - 140 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 77118 0.66 0.541082
Target:  5'- gCCAGCAGc--GG-GCCGCCCuuGuuGCu -3'
miRNA:   3'- gGGUCGUCcuaCCgCGGCGGG--CggCG- -5'
6481 5' -64.2 NC_001847.1 + 51635 0.66 0.531663
Target:  5'- aCC-GCAGGAaGGCa-CGCagCGCCGCg -3'
miRNA:   3'- gGGuCGUCCUaCCGcgGCGg-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 50402 0.67 0.476554
Target:  5'- cUCguGCugcGGuUGGUGCgCGCCUGCCuGCa -3'
miRNA:   3'- -GGguCGu--CCuACCGCG-GCGGGCGG-CG- -5'
6481 5' -64.2 NC_001847.1 + 3691 0.67 0.484648
Target:  5'- cUCCGGCAcgaacacGGccgcgGGCcCCGCggCCGCCGCg -3'
miRNA:   3'- -GGGUCGU-------CCua---CCGcGGCG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 102277 0.67 0.485551
Target:  5'- cUCCAGCgccAGGAUcucGCGCgCGagCGCCGCg -3'
miRNA:   3'- -GGGUCG---UCCUAc--CGCG-GCggGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 72989 0.66 0.523236
Target:  5'- gCCCGcGCGGGAgcuggccgcagcgcgGGCGCgGaaCCagGCCGCg -3'
miRNA:   3'- -GGGU-CGUCCUa--------------CCGCGgC--GGg-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 107085 0.66 0.522303
Target:  5'- aCCgGGCAGGuuuucCGCCaGCagCGCCGCg -3'
miRNA:   3'- -GGgUCGUCCuacc-GCGG-CGg-GCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 1161 0.66 0.522303
Target:  5'- cUCCGGCAGc---GCgGCCGCgcagaaggccaCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCcuacCG-CGGCG-----------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 14020 0.66 0.521371
Target:  5'- -gCAGCAGGc-GGCGgCGCagcgcgcaguuuaCCGUCGCg -3'
miRNA:   3'- ggGUCGUCCuaCCGCgGCG-------------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 119511 0.66 0.513008
Target:  5'- gCCCgAGCccGGAggGGCGgCGgCCGCgGCc -3'
miRNA:   3'- -GGG-UCGu-CCUa-CCGCgGCgGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 62550 0.66 0.513008
Target:  5'- gCCAGCAGcGcguuuUGGC-CCaGCCCGCgcauCGCg -3'
miRNA:   3'- gGGUCGUC-Cu----ACCGcGG-CGGGCG----GCG- -5'
6481 5' -64.2 NC_001847.1 + 27311 0.66 0.507464
Target:  5'- gCCCgAGCuuccccuccGCGCCGCcgCCGCCGCg -3'
miRNA:   3'- -GGG-UCGuccuac---CGCGGCG--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 55109 0.66 0.503782
Target:  5'- -gCGGCGGcGAUGaCGCCGaCCCcccCCGCg -3'
miRNA:   3'- ggGUCGUC-CUACcGCGGC-GGGc--GGCG- -5'
6481 5' -64.2 NC_001847.1 + 120800 0.66 0.503782
Target:  5'- gUCGGCAGca-GGCaccccuucuCUGCCCGCCGCu -3'
miRNA:   3'- gGGUCGUCcuaCCGc--------GGCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 114115 0.66 0.494629
Target:  5'- cCCCAucucucucugcGCAGGGUcGC-CCGCacaGCCGCg -3'
miRNA:   3'- -GGGU-----------CGUCCUAcCGcGGCGgg-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 44086 0.66 0.494629
Target:  5'- gCCuGCuGc--GGCGUcugCGCCCGCCGCc -3'
miRNA:   3'- gGGuCGuCcuaCCGCG---GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 132972 0.66 0.494629
Target:  5'- gCCCAgGCGGcGcgGGCGCUGCgagaCCugguGCUGCg -3'
miRNA:   3'- -GGGU-CGUC-CuaCCGCGGCG----GG----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 38943 0.66 0.493717
Target:  5'- uCCCGGgccCGGGGgccgcgagcgccaUGGCGgCGgCCGCgGCg -3'
miRNA:   3'- -GGGUC---GUCCU-------------ACCGCgGCgGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 132483 0.67 0.485551
Target:  5'- gCCGGCcgagccgccgGGcGAaGGCGCCGCaaGCgGCg -3'
miRNA:   3'- gGGUCG----------UC-CUaCCGCGGCGggCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 54685 0.67 0.485551
Target:  5'- gCCCGaCGGcGgcGGCGgCGCCCGCgGg -3'
miRNA:   3'- -GGGUcGUC-CuaCCGCgGCGGGCGgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.